PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G64530.1 | ||||||||
Common Name | ANAC104, MUB3.5, NAC104, XND1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 21557.9 Da PI: 4.6913 | ||||||||
Description | xylem NAC domain 1 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.4 | 1e-34 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y+++PwdLp k+ +e ++wyf+s++ ++r+t++gyW + g d++++++ ++ AT5G64530.1 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYHYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWGSMGMDEPIYTSsTH 91 79*************************999.99***************87778899*****9975........5799****************98778 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk L+fy g++ +t+W+m+ey+l AT5G64530.1 92 KKVGIKKYLTFYLGDS----QTNWIMQEYSL 118 88**********7654....68*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-44 | 1 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.03 | 3 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-22 | 4 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0005352 | anatomy | xylem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YHYDPWDLPG KALGEGRQWY 60 FYSRKTQERV TSNGYWGSMG MDEPIYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD 120 SSSSSSRSSK RSSRASSSSH KPDYSKWVIC RVYEQNCSEE EDDDGTELSC LDEVFLSLDD 180 LDEVSLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-36 | 1 | 161 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.28954 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42568769 | 0.0 | ||||
Genevisible | 247264_at | 0.0 | ||||
Expression Atlas | AT5G64530 | - | ||||
AtGenExpress | AT5G64530 | - | ||||
ATTED-II | AT5G64530 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G64530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Reduced plant height and length of tracheary elements in the stem. {ECO:0000269|PubMed:18069942}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G64530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118783 | 0.0 | AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14. | |||
GenBank | BT025746 | 0.0 | BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201258.2 | 1e-137 | xylem NAC domain 1 | ||||
Swissprot | Q8GWK6 | 1e-138 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A178UC01 | 1e-136 | A0A178UC01_ARATH; XND1 | ||||
STRING | AT5G64530.1 | 1e-136 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 | Representative plant | OGRP4510 | 10 | 24 |
Link Out ? help Back to Top | |
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Phytozome | AT5G64530.1 |
Entrez Gene | 836574 |
iHOP | AT5G64530 |
wikigenes | AT5G64530 |