PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0390311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 263aa    MW: 30810.4 Da    PI: 10.6436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0390311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08113158555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h ++Er RR++ +++++ L +llP+      +K +K  i+++A++ I++L+
  RcHm_v2.0_Chr4g0390311 113 HMINERMRREKQKQSYFALHSLLPNG-----TKSDKNWIVQMATRNIQQLE 158
                             7899********************97.....7*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MYIYSNRTFW NLKFPHTRRA QRSRETKNKK MDRFILEALE GDSLWYENPP VLNPSAFVPY  60
TEAPESGKPT NSGSNSMNMN KRMVRFLRKS YPPSTARIEI GEKEHGKDKG FRHMINERMR  120
REKQKQSYFA LHSLLPNGTK SDKNWIVQMA TRNIQQLERQ KEELRKWNME LESILGKKRS  180
VTWRRIRLRV ANPTSGVDSM LEVLKCLKSL GLKTRNIQSF FSPYEFSAEV EIESKIGATV  240
LEAAMQETLY EVERKLLSSV PGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.19e-38bHLH family protein