PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G43650.1 | ||||||||
Common Name | BHLH92, EN22, K9D7.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 29012.5 Da PI: 10.2239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 88 | 135 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h Er RR++ ++++ L +llP a +K++K +i+ekAv+ I +Lq AT5G43650.1 88 RRHMLKERTRREKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDEIAKLQ 135 568999**********************.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-11 | 79 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-8 | 83 | 139 | No hit | No description |
PROSITE profile | PS50888 | 13.167 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 88 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-6 | 89 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-5 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDNFFLGLSC QEENNFWDLI VADISGDRSV SVPIRSAFRS YMKDTELRMM SPKISSSKVN 60 VKKRMVNLLR KNWEEKKNTV APEKERSRRH MLKERTRREK QKQSYLALHS LLPFATKNDK 120 NSIVEKAVDE IAKLQRLKKE LVRRIKVIEE KSAKDGHDEM SETKVRVNLK EPLSGLDSML 180 EALHYLKSMG TKLKTVHANF SPQEFSATMT IETQIRGEEV EKRVERRLQE TEWKLLFLPE 240 ASFYKDY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.28504 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G43650 | |||||
AtGenExpress | AT5G43650 |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G43650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G43650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065390 | 0.0 | AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds. | |||
GenBank | AY096718 | 0.0 | AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199178.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9FIX5 | 0.0 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A178ULD2 | 1e-177 | A0A178ULD2_ARATH; BHLH92 | ||||
STRING | AT5G43650.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 | Representative plant | OGRP9763 | 11 | 12 |
Link Out ? help Back to Top | |
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Phytozome | AT5G43650.1 |
Entrez Gene | 834385 |
iHOP | AT5G43650 |
wikigenes | AT5G43650 |