PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0497471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 474aa MW: 52897.7 Da PI: 6.3777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0497471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	4.1e-56	23	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdee++++yL++kv ++++++ ++i e+d++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatg RcHm_v2.0_Chr3g0497471 23 LPPGFRFHPTDEEIITCYLTEKVVNSNFTA-TAIGEADLNKCEPWDLPNKAKMGEKEWYFFCQRDRKYPTGMRTNRATQSGYWKATG 108 79***********************999.88***********99999****************************** PP NAM 88 kdkevlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128 kdke++++k+++ vg+kktLvfy+grapkgekt+Wvmheyrl RcHm_v2.0_Chr3g0497471 109 KDKEIYKRKTNNsnclVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 153 ***844434566*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MMEEEAVVVN QGGGGGDDEL MALPPGFRFH PTDEEIITCY LTEKVVNSNF TATAIGEADL 60 NKCEPWDLPN KAKMGEKEWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIYKRKTNN 120 SNCLVGMKKT LVFYTGRAPK GEKTNWVMHE YRLDGKFTHY NLSKPAKDEW VVCRVFHKNM 180 GLKRTSSPLS PTDQSAGGQL LRLNSFGDDF LDSSSSLPPL MDPTPSYDRP AGSYGGYRFD 240 YGEHDDNDSK GKITAAPLSV PSANKTTPAD MQYYFQQVGS STRQINCFQH PNAAAAAASY 300 QMSNPMATPT MLYPQIHHNH QLIPNPSFSF QPNNNPDYYF QQEIRGPRTS FPNNQGSSFD 360 FQSSKLDHQA ILRAMAAAKN RNHQIETSVT TAGSGGLDSR QCKVEQYSSN NQSMFSVSQD 420 TGLSTADMNT TTEISSSVVS KQEIEVGSSN TLYEDHLQSP SVVPISDIEG LWDY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MMEEEAVVVN QGGGGGDDEL MALPPGFRFH PTDEEIITCY LTEKVVNSNF TATAIGEADL  60
NKCEPWDLPN KAKMGEKEWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIYKRKTNN  120
SNCLVGMKKT LVFYTGRAPK GEKTNWVMHE YRLDGKFTHY NLSKPAKDEW VVCRVFHKNM  180
GLKRTSSPLS PTDQSAGGQL LRLNSFGDDF LDSSSSLPPL MDPTPSYDRP AGSYGGYRFD  240
YGEHDDNDSK GKITAAPLSV PSANKTTPAD MQYYFQQVGS STRQINCFQH PNAAAAAASY  300
QMSNPMATPT MLYPQIHHNH QLIPNPSFSF QPNNNPDYYF QQEIRGPRTS FPNNQGSSFD  360
FQSSKLDHQA ILRAMAAAKN RNHQIETSVT TAGSGGLDSR QCKVEQYSSN NQSMFSVSQD  420
TGLSTADMNT TTEISSSVVS KQEIEVGSSN TLYEDHLQSP SVVPISDIEG LWDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-102	NAC family protein