PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0493011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 564aa    MW: 62028.9 Da    PI: 4.9935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0493011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.12.2e-1391975581374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fse 86 
                             lv++Ll+cAeav++++l+ a+al++++ +la ++  +m+++a+yf+eALa+r++r        + p+e+s   +s+   +l++ f+e
  RcHm_v2.0_Chr3g0493011 197 LVHTLLACAEAVQQDNLKVADALVKQVGTLAVSQTGAMRKVATYFAEALARRIYR--------VYPQEDSL--VSSYSDILQMhFYE 273
                             689****************************************************........44555553..33333333444*** PP

                    GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             ++P+lkf+h+taNqaIlea+++++ vH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g++La+fA+++g
  RcHm_v2.0_Chr3g0493011 274 TCPYLKFAHFTANQAILEAFATATSVHVVDFGLKQGMQWPALMQALALRPGGPPVFRLTGVGPPQPDNTDALQQVGWKLAQFADTMG 360
                             *************************************************************************************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                             v+fef+ lva++l+dle+++L+v+p   E+laVn+v++lh ll++++++e+    v+  +k ++Pk+v++veqea+hn++ Fl+rf 
  RcHm_v2.0_Chr3g0493011 361 VEFEFRGLVANSLADLEPSMLHVRPpeVETLAVNSVFELHCLLARPGAIEK----VMASIKAMNPKIVTMVEQEANHNGPVFLDRFN 443
                             *************************9999**********************....******************************** PP

                    GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             e+l+yys+lfdsle +  + s+e+ ++++++lgr+i+nvvac g +r+erhetl +Wr+rl++aGF+pv+l++++ kqak+ll+ ++
  RcHm_v2.0_Chr3g0493011 444 ESLHYYSSLFDSLEGS--SGSSEDLVMSEVYLGRQICNVVACDGGDRVERHETLTQWRNRLSRAGFEPVHLGSNVFKQAKTLLALYA 528
                             *************999..799****************************************************************** PP

                    GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + gy+vee++gsl+lgW++rpL+++SaW+
  RcHm_v2.0_Chr3g0493011 529 gGGGYQVEENNGSLMLGWHTRPLIATSAWQ 558
                             9999*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    
MKRNHQVSCG GGQNGSNTSV SNSSKAKIWE EEQESGSMDE LLAVLGYKVR SDDMADVAEK  60
LEQLEMVMGS AQQDGISQLS DTVHYNPSDL SGWLQTMLME LNPIDDDLSN SQQQKQKQKQ  120
KQKQIETQSR VIYDDNSEYD LRAIPGIAAY PQSQLQTETE INSKRLKTST GSASSSSSSV  180
EPRPLVVVDA QDTGVRLVHT LLACAEAVQQ DNLKVADALV KQVGTLAVSQ TGAMRKVATY  240
FAEALARRIY RVYPQEDSLV SSYSDILQMH FYETCPYLKF AHFTANQAIL EAFATATSVH  300
VVDFGLKQGM QWPALMQALA LRPGGPPVFR LTGVGPPQPD NTDALQQVGW KLAQFADTMG  360
VEFEFRGLVA NSLADLEPSM LHVRPPEVET LAVNSVFELH CLLARPGAIE KVMASIKAMN  420
PKIVTMVEQE ANHNGPVFLD RFNESLHYYS SLFDSLEGSS GSSEDLVMSE VYLGRQICNV  480
VACDGGDRVE RHETLTQWRN RLSRAGFEPV HLGSNVFKQA KTLLALYAGG GGYQVEENNG  540
SLMLGWHTRP LIATSAWQLA SPTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein