PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0481471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 658aa    MW: 76463.7 Da    PI: 5.4554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0481471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.88.1e-44301581128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppG+rF Ptd el+ +yL+kk+ +++l+l + i+e+diy+++P+ L  ++++  +e+ewyfF++r++ky++g+r+nr++++g+Wk 
  RcHm_v2.0_Chr3g0481471  30 LPPGYRFAPTDAELILYYLQKKILKQELPL-NKIREIDIYQHDPQYLAeTQLNRhGEREWYFFTPRERKYPHGSRPNRTAHDGFWKV 115
                             79****************************.78**************84444432777***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd+ ++s++ge +g k+tL +++g++++ +kt+W mheyrl
  RcHm_v2.0_Chr3g0481471 116 TGKDEVITSATGEIIGYKNTLDYFEGTHSENQKTKWKMHEYRL 158
                             *****************************************98 PP
2NAM136.91.3e-422573832128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             ppG++F Ptd el+ +yLk+k+ +++l++ + i++ +iy+++P++L  +  + +e ewyfFs+rd++y++g+r+nr++k gyWkat 
  RcHm_v2.0_Chr3g0481471 257 PPGYQFVPTDAELIIYYLKRKILNQQLPV-NRIRDENIYHYHPQTLAeMYPRIREIEWYFFSSRDRRYPNGSRPNRSAKGGYWKATK 342
                             9****************************.77**************8344445667******************************* PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +d+ +++++ge++g k  L fy+g++ +g+kt+W mheyr+
  RcHm_v2.0_Chr3g0481471 343 RDEIITAQGGEEIGFKMHLEFYEGTHAQGRKTNWKMHEYRI 383
                             ***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MDHLFLSMES NYQKNPMFIE DPVDVYLNSL PPGYRFAPTD AELILYYLQK KILKQELPLN  60
KIREIDIYQH DPQYLAETQL NRHGEREWYF FTPRERKYPH GSRPNRTAHD GFWKVTGKDE  120
VITSATGEII GYKNTLDYFE GTHSENQKTK WKMHEYRLKK SERDEDIAAS NNEKCQRDMK  180
LDDCVLCKIY TSNRCKAGKS TKKISNSAKK SFNSVQDRDV QHENQDQPTF GVSMVPNNQQ  240
SDTMSDGEID DYFRSFPPGY QFVPTDAELI IYYLKRKILN QQLPVNRIRD ENIYHYHPQT  300
LAEMYPRIRE IEWYFFSSRD RRYPNGSRPN RSAKGGYWKA TKRDEIITAQ GGEEIGFKMH  360
LEFYEGTHAQ GRKTNWKMHE YRIKEENEEN DIGPPQNTNK GEGISMRLDD WVLCKIYIKK  420
NFKADTDSNS SKTSDNSDQV VLPVTNVTTS PDCQNKLAIQ HEVQDQSLNA SQFDHNGFST  480
LTNYRDVESS SSNFWNQNYT DDYDTYLMQM SRDPSSSRFF SSPFPLQSST DQICAELEPV  540
DDKISEVDPS SMLPAHVREC DENISKNKNQ NYTDDYDTYL MQMSRDPSSS RLFSSPFPLQ  600
SSTDQICAGL KPVDDKISEV DPSSIVLPAH VREYDNRACK AEPIQPAVRD EGDDHVSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-46NAC family protein