PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0475961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 701aa MW: 76784.4 Da PI: 7.2688

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0475961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.5e-09	392	429	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + RcHm_v2.0_Chr3g0475961 392 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 429 554459******************************88 PP
2	BELL	120.2	8.9e-39	256	327	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+s+l+eVd+rY+qy+ q+q+vissFe++ g+gsa+ Yt+lAl++iS++FrcLkdai++qi RcHm_v2.0_Chr3g0475961 256 ERQEIQMKKGKLISMLDEVDQRYRQYHRQMQMVISSFEQASGIGSARTYTALALQTISKQFRCLKDAITNQI 327 79*********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MATYFHGNSE IQPPDGGLQT LVLMNHGGYV QYSDSTQQQQ SPSAATNQLV FLNSAGANPL 60 AQGSTLPHAP PSHTQQFVGI PLPTVSSQDP SNSQSMHPHH DMAALHAFMP RIQTQYALWN 120 SIDPSARETP RAQQGLSLSL SSQQPGFGSF RGSDREVPTG EDIRVSSGSN SSASGVTNGV 180 SGMQSVLLSS KYLKAAQELL DEVVNVGNGM RSDLPKKGNG NQSKAMAESS MAAAGDGSIG 240 GDQDSGKRAV ELSTAERQEI QMKKGKLISM LDEVDQRYRQ YHRQMQMVIS SFEQASGIGS 300 ARTYTALALQ TISKQFRCLK DAITNQIRAA NKSLGEEDCS GGKIEGSRLK YVDHQLRQQR 360 ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS 420 NWFINARVRL WKPMVEEMYL EEVKENELNG SSEKMSKSNE DSASKSTPPQ ERSPATDQNQ 480 TNSTFNSKQE TSTNHIAAPP SMSMSMSSAS TSPTNIVRNQ SGFSLIGSSE LDGITQGSPK 540 KPRSTELMHS PNSMMNHMDV KPQEVSNEQV SMKFGDERQS RDGYSFMGGQ TNFIGNFGQY 600 PIGEIGRFDA DQFTPRFSGN GVSLTLGLPH CENLSLSGAH HQTFLPNQNI QLGRRVDHIG 660 EPNDQFGTMN SSAPHSSAGF ESIDIQNRKR FVAQLLPDFV A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MATYFHGNSE IQPPDGGLQT LVLMNHGGYV QYSDSTQQQQ SPSAATNQLV FLNSAGANPL  60
AQGSTLPHAP PSHTQQFVGI PLPTVSSQDP SNSQSMHPHH DMAALHAFMP RIQTQYALWN  120
SIDPSARETP RAQQGLSLSL SSQQPGFGSF RGSDREVPTG EDIRVSSGSN SSASGVTNGV  180
SGMQSVLLSS KYLKAAQELL DEVVNVGNGM RSDLPKKGNG NQSKAMAESS MAAAGDGSIG  240
GDQDSGKRAV ELSTAERQEI QMKKGKLISM LDEVDQRYRQ YHRQMQMVIS SFEQASGIGS  300
ARTYTALALQ TISKQFRCLK DAITNQIRAA NKSLGEEDCS GGKIEGSRLK YVDHQLRQQR  360
ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS  420
NWFINARVRL WKPMVEEMYL EEVKENELNG SSEKMSKSNE DSASKSTPPQ ERSPATDQNQ  480
TNSTFNSKQE TSTNHIAAPP SMSMSMSSAS TSPTNIVRNQ SGFSLIGSSE LDGITQGSPK  540
KPRSTELMHS PNSMMNHMDV KPQEVSNEQV SMKFGDERQS RDGYSFMGGQ TNFIGNFGQY  600
PIGEIGRFDA DQFTPRFSGN GVSLTLGLPH CENLSLSGAH HQTFLPNQNI QLGRRVDHIG  660
EPNDQFGTMN SSAPHSSAGF ESIDIQNRKR FVAQLLPDFV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.1	1e-154	TALE family protein