PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0474741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 291aa    MW: 32661.3 Da    PI: 6.257
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0474741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.15.5e-4351422127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratks 80 
                             ppGfrF Pt+eelv++yL +k++g++      ++++i+ +diy+++PwdLp+    ++++++++w+fF++r++++a+g r++r t++
  RcHm_v2.0_Chr3g0474741   5 PPGFRFYPTEEELVSFYLPHKLDGRRedvnRVMDRIIPVLDIYEFNPWDLPRnsgeMCHGDQEQWFFFIPRQESEARGGRPKRLTTT 91 
                             9*************************66633334479999**********9546755555778************************ PP

                     NAM  81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                             gyWkatg+   v+s+    ++ ++glk+t+vfy+grap+g+kt+W m+ey+
  RcHm_v2.0_Chr3g0474741  92 GYWKATGSPSYVFSSssntNHGAIGLKRTMVFYTGRAPNGSKTEWKMNEYK 142
                             **************966655556***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MEDFPPGFRF YPTEEELVSF YLPHKLDGRR EDVNRVMDRI IPVLDIYEFN PWDLPRNSGE  60
MCHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVFSSSSNT NHGAIGLKRT  120
MVFYTGRAPN GSKTEWKMNE YKAIDGDNQL QAPSSSNAAP SPPLRQEFSL CRVYKKSKCL  180
RAFDRRPSGT GDIMRRPTVT VHLPAVPQLA DTDHQEGSTY PTSISHARNI IPAAPNSYDV  240
EVERRSLSSS GSSSSGDLGQ PSLSGQSTGS LPMAVDNGEP LWELDQLDWF N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-71NAC family protein