PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0470621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 26552.6 Da PI: 5.2149 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.4e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l +v++ G ++W++ a++ g++R++ +c++rw++yl RcHm_v2.0_Chr3g0470621 15 KGPWLEEEDERLTMYVRLKGDRRWDALAKESGLRRSGRSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 72 | 113 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + eE+++++++++++G++ W++Iar ++ gRt++++k++w+++l RcHm_v2.0_Chr3g0470621 72 SVEEEKIILHLHELWGNK-WSKIARVLP-GRTDNEIKNYWRTHL 113 78****************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MAYEAAAVEG EKLRKGPWLE EEDERLTMYV RLKGDRRWDA LAKESGLRRS GRSCRLRWLN 60 YLRPDLKHGH ISVEEEKIIL HLHELWGNKW SKIARVLPGR TDNEIKNYWR THLVKKAQIQ 120 DGDAASAGNL QCTSKRAQQG LFFQDGDDMS AEKKYNFDQD LDSVEKLWGA KETYSDDLCL 180 SDFALPSSPY ETWLSDWISE LSSEQSGITW IPHHDSDAWD CSSSLWDMN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 5e-42 | MYB family protein |