PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr3g0470081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 209aa MW: 23264.6 Da PI: 4.8671 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.4 | 6e-14 | 22 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHH.HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaee.reeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ +yp+ e+ ++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr3g0470081 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQmIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 83 7****************96568***9765389****************************97 PP | |||||||
2 | Wus_type_Homeobox | 89 | 4.7e-29 | 21 | 84 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkee.iqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Ptp Q++iL+ ly+ +G + P+ e+ iq+i +L++yG+iedkNVf+WFQN kaRerqk RcHm_v2.0_Chr3g0470081 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQmIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 84 78***************9889*****977659*******************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MEQQTQQQIE DGGNNQTAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ MIQEICLHLK 60 QYGQIEDKNV FFWFQNLKAR ERQKLKEFRN VPVGGSLDLN FGSTSSTDDS RSIDLNFGSR 120 VGYGVDPYSS SPFNTNTSTA SFGTTGGQSF MEQRGGDHQE IETLPLFPMH GEDIFGNMKT 180 TSKGGSGYGG DSRISLELSL NSYGDADMV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-20 | WOX family protein |