PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0468221

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 478aa MW: 52056.9 Da PI: 8.9818

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0468221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.2e-32	196	252	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k RcHm_v2.0_Chr3g0468221 196 DGYNWRKYGQKQVKGSDYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252 9*************************************.*************85 PP
2	WRKY	103.1	1.5e-32	396	452	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver +edpk++++tYeg+Hnh+ RcHm_v2.0_Chr3g0468221 396 DGFRWRKYGQKVVKGNPYPRSYYRCTSVKCSVRKHVERVSEDPKAFITTYEGKHNHD 452 9*******************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MDIKEAERVV IAKPVASRPT CSSFKSFTEL LTGAIDASPS NVSSETAVPA IRPKTVRFKP 60 TATHPVVGLV SPPAETPGAA LSNSAEKVSK SDNKSTVVYK PLAKVVSRAT VTALANLGNF 120 NTSQQQPQSS VGVGVVLHPN REKCFKTQLI SNLYQKSPSC AETCQSTEPV KIVPQNMEED 180 AKNIPAAANS DRPSYDGYNW RKYGQKQVKG SDYPRSYYKC THPNCPVKKK VERSLDGQIA 240 EIVYKGEHNH SKPQPPKRSS SGTQGSGFAS DATGQDNNTR LWNSHLNEKN EGSEGRVEDQ 300 NEVGVPLHSY QSKSIVHYDP LATGALNAGG ATPDNSCGVS GECEEASKGV EAEDYEPRSK 360 RRKSENQSNE VGISGEVMQE PRVVVQSSAD SEITGDGFRW RKYGQKVVKG NPYPRSYYRC 420 TSVKCSVRKH VERVSEDPKA FITTYEGKHN HDMPLRTANP GASSEKDTQP PPTSKEKP

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MDIKEAERVV IAKPVASRPT CSSFKSFTEL LTGAIDASPS NVSSETAVPA IRPKTVRFKP  60
TATHPVVGLV SPPAETPGAA LSNSAEKVSK SDNKSTVVYK PLAKVVSRAT VTALANLGNF  120
NTSQQQPQSS VGVGVVLHPN REKCFKTQLI SNLYQKSPSC AETCQSTEPV KIVPQNMEED  180
AKNIPAAANS DRPSYDGYNW RKYGQKQVKG SDYPRSYYKC THPNCPVKKK VERSLDGQIA  240
EIVYKGEHNH SKPQPPKRSS SGTQGSGFAS DATGQDNNTR LWNSHLNEKN EGSEGRVEDQ  300
NEVGVPLHSY QSKSIVHYDP LATGALNAGG ATPDNSCGVS GECEEASKGV EAEDYEPRSK  360
RRKSENQSNE VGISGEVMQE PRVVVQSSAD SEITGDGFRW RKYGQKVVKG NPYPRSYYRC  420
TSVKCSVRKH VERVSEDPKA FITTYEGKHN HDMPLRTANP GASSEKDTQP PPTSKEKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	1e-113	WRKY family protein