PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0462231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 535aa    MW: 60604.9 Da    PI: 4.3961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0462231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.85.2e-461615323374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lL ++Aea + g++ l + +L+ +se +sp g++++Rla+ + +      ++      + l+      ++ ++  aa+k+f + +P
  RcHm_v2.0_Chr3g0462231 161 HLLQAFAEAKEYGQKDLEEVILSCISEKVSPIGESFERLAFNLCQEVVDEHQQ----GGDYLKQ-----ESLKNFEAAFKVFIQNFP 238
                             8999************************************9866544444443....3333322.....236788899********* PP

                    GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAe 170
                             + +f+h +aN+aIlea+  e e++Hi+Dfd+ +G+Q   L++aLa+R +   +l++T+++ +e++      + + eet+++L++ A+
  RcHm_v2.0_Chr3g0462231 239 YARFAHYVANSAILEAIPAEaEAIHIVDFDMREGVQLSQLIEALAQRFK---TLKVTAIKWEEEEsdcapPHGRFEETKKQLQNHAR 322
                             *****************99989*************************66...5******998877889999**************** PP

                    GRAS 171 elgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl.........sPkvvvvveq 244
                             ++g++++ + +   ++edl +e  + k+    +E la n++++l ++ +    ++ +  e L+l k+l         ++ ++++ + 
  RcHm_v2.0_Chr3g0462231 323 SFGLNLKVEEV---AMEDLVTEIKKAKKrgggKEFLAFNCMVSLPHMRR--RRSRGHVMEYLRLAKELansgnskttKSGIITFGDG 404
                             *********98...555553333233335678**************983..33333467777777665333322222788******* PP

                    GRAS 245 e.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                             + +++  n++sF   f e l +y al++s+e ++p++  e+r+ +E  ++++ +++    ++     +  +++ W      +G++  
  RcHm_v2.0_Chr3g0462231 405 DaCERlgNHSSFSSFFNENLVHYQALLESMELNFPSHLaEARMAMECIFIAPFVSSQAWFQKWTEM-KDCHVQPW------FGLEGR 484
                             97666799***************************987799*******999999999888888744.44458888......8***** PP

                    GRAS 328 plsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                             +ls+++ ++ak ++    s g r+e  + +++vl W++ pLv vS W+
  RcHm_v2.0_Chr3g0462231 485 RLSKENLMEAKEIVGDERSYGIRIEgLNGNEMVLEWRGTPLVRVSTWE 532
                             *************************44567888**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MESAFLEPWF FENFIDSSFD QPDFINMDDT PIDSPDFSSL FNSNEVFKIS EIASDPFATL  60
FPCDDLIQVT SQVEEVSMDL EAYETNLMIE GFYGNSLEGS EGSFPSQQAS SHQFSAEGND  120
VWSPNSIVNS EASSMDSTSI QSPLNLPREE EGIENQLSIC HLLQAFAEAK EYGQKDLEEV  180
ILSCISEKVS PIGESFERLA FNLCQEVVDE HQQGGDYLKQ ESLKNFEAAF KVFIQNFPYA  240
RFAHYVANSA ILEAIPAEAE AIHIVDFDMR EGVQLSQLIE ALAQRFKTLK VTAIKWEEEE  300
SDCAPPHGRF EETKKQLQNH ARSFGLNLKV EEVAMEDLVT EIKKAKKRGG GKEFLAFNCM  360
VSLPHMRRRR SRGHVMEYLR LAKELANSGN SKTTKSGIIT FGDGDACERL GNHSSFSSFF  420
NENLVHYQAL LESMELNFPS HLAEARMAME CIFIAPFVSS QAWFQKWTEM KDCHVQPWFG  480
LEGRRLSKEN LMEAKEIVGD ERSYGIRIEG LNGNEMVLEW RGTPLVRVST WENQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-16GRAS family protein