PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0462211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 535aa    MW: 60373.6 Da    PI: 4.3578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0462211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1372e-421605322374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL + Ae +++g++el + +   +++ +sp g+++ Rla+++ +      ++     ++    +++   + ++   a+klf++ +
  RcHm_v2.0_Chr3g0462211 160 RHLLKAHAESMANGQKELEEVIFRCIKDKVSPIGQSLDRLAFHLCREVVDDQQG----DVD--YLKQQ---SYKNFEPAFKLFYQNF 237
                             79999*************************************977654444444....232..23333...366777899******* PP

                    GRAS  89 PilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAe 170
                             P+ kf+h +aN+aIle++ ++ e+vH++Dfd+++G+Q   +++aLa+R +    lR+T+++ ++++     + +  e +++L++ A+
  RcHm_v2.0_Chr3g0462211 238 PYGKFAHYAANSAILESIPEDtEMVHVVDFDMGEGVQLSQMIEALAQRLKT---LRVTAIKWEDEEsdcvLQGRFDERKKQLQNHAR 321
                             ******************88779*************************765...******9987777788788999*********** PP

                    GRAS 171 elgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvve 243
                             ++g++++ + +   +ledl + e++  +    +E la n++++l ++ +++  ++s   e+L+l k+l +k          +v++ +
  RcHm_v2.0_Chr3g0462211 322 SFGLNLKVEEV---ALEDL-VGEIKNTKkrgvKEFLAFNCMVSLPHMRRRR--SRSLALEFLRLAKDLLAKsgnyrtgktgIVTFGD 402
                             *********97...78888.444433333779*************998443..34445799*99999966545555555559***** PP

                    GRAS 244 qe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                              e + +  n+ +F   f   l +y al +s+e+++p++  e+r+++E  +l++ +++    ++     +  +++ W      +G++ 
  RcHm_v2.0_Chr3g0462211 403 GEaCGRleNQLDFSSFFDGNLVHYQALTESMESNFPSHLaEARMVMESIFLAPYVSSQAWFQNWTEMREDCHVQPW------FGLEG 483
                             *9644458999*************************98779**************999888888766666678999......8**** PP

                    GRAS 327 vplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                              +ls+++  +ak ++   +s g r+  e+ +++ l W+++pLv vS W+
  RcHm_v2.0_Chr3g0462211 484 RRLSKENLLEAKGIVGDESSYGIRIGgENGNEMALEWRGNPLVRVSTWE 532
                             *************************966677888**************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MEYSALLEPS WPFHNLVNSP FDQSDPMNMD DTQMGSSDFS SLIINSDEFS DLSDTCSDPF  60
ASLFSGNDLI QVSSQVEVFP MNLEEFDPNL MIDCLYGSFL EGSEGSLPSQ EISSQFSIEG  120
DCVSNSLVTS EVSSMDSTSI QTSLTLPAEV VEIDNESSIR HLLKAHAESM ANGQKELEEV  180
IFRCIKDKVS PIGQSLDRLA FHLCREVVDD QQGDVDYLKQ QSYKNFEPAF KLFYQNFPYG  240
KFAHYAANSA ILESIPEDTE MVHVVDFDMG EGVQLSQMIE ALAQRLKTLR VTAIKWEDEE  300
SDCVLQGRFD ERKKQLQNHA RSFGLNLKVE EVALEDLVGE IKNTKKRGVK EFLAFNCMVS  360
LPHMRRRRSR SLALEFLRLA KDLLAKSGNY RTGKTGIVTF GDGEACGRLE NQLDFSSFFD  420
GNLVHYQALT ESMESNFPSH LAEARMVMES IFLAPYVSSQ AWFQNWTEMR EDCHVQPWFG  480
LEGRRLSKEN LLEAKGIVGD ESSYGIRIGG ENGNEMALEW RGNPLVRVST WENQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-21GRAS family protein