PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0460361
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 328aa    MW: 37628.5 Da    PI: 5.5885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0460361genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.43.8e-25144205159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v+r +++p+++ +tY g+H+++
  RcHm_v2.0_Chr3g0460361 144 VDDGHAWRKYGQKMILNTRHPRNYFRCTHKfdqGCKATKHVQRIKDEPQLFRTTYYGNHTCT 205
                             59***************************9999***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MEWTWPESVS SNRQRVVEEL VQGREMVNQL QRCLSGDVRS AEGLVTKILG SFTNTLRILN  60
GSEEAKEELI SQIQANSPTS TVTASGSAAA GTDSLSWDAL DDAGKSEDSN EESYKSTETF  120
KDRRGSYKRR KTSHSWTKDT LDLVDDGHAW RKYGQKMILN TRHPRNYFRC THKFDQGCKA  180
TKHVQRIKDE PQLFRTTYYG NHTCTDYLRA PELILDSSSS QDSSKNMIRF DNTNNDFTRK  240
QEHPFFSSFT SIKKESVKEE EMITPINDHD HVIHHNQQLS SCDYLMSPGL GVFESSASTI  300
AYDHEDVFSR IMVGYFDDEV DFPYEFFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-41WRKY family protein