PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0458721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 441aa MW: 49105.2 Da PI: 7.6178

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0458721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl RcHm_v2.0_Chr3g0458721 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45	2.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ RcHm_v2.0_Chr3g0458721 67 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPIS AETEQNDHSK EISQLSPTNY KSNEQQKASV GSNELNLVEA VANSKQPENH 180 RYPVEVSSSS QVISNRNSTQ EFFIDRAACS SHEGSTTTNC RPSDFVGYFS FQHHHQSNFG 240 SSSDTMGLNA VNPNPTFSFL NQNSRSNSDP QMVSEFSTSM STPPTLLPSM SSGSLFGTRV 300 KPSISLPSDN SSTVSWDQSS AGYSNNGGFD STAAAFSWGL MPEVPVKSDD VEEINKWSEY 360 LHSPFLMGAN TMQNINQSSP YNSTEIKPET QYFMTNNGSS STSAATTSWP HHHQQASNLQ 420 ASSEMYTKDL QRLAVAFGQT L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPIS AETEQNDHSK EISQLSPTNY KSNEQQKASV GSNELNLVEA VANSKQPENH  180
RYPVEVSSSS QVISNRNSTQ EFFIDRAACS SHEGSTTTNC RPSDFVGYFS FQHHHQSNFG  240
SSSDTMGLNA VNPNPTFSFL NQNSRSNSDP QMVSEFSTSM STPPTLLPSM SSGSLFGTRV  300
KPSISLPSDN SSTVSWDQSS AGYSNNGGFD STAAAFSWGL MPEVPVKSDD VEEINKWSEY  360
LHSPFLMGAN TMQNINQSSP YNSTEIKPET QYFMTNNGSS STSAATTSWP HHHQQASNLQ  420
ASSEMYTKDL QRLAVAFGQT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-100	MYB family protein