PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0447881

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 729aa MW: 80160 Da PI: 6.1593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0447881	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.7e-31	245	302	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g Hnh RcHm_v2.0_Chr3g0447881 245 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSF-DGQITEIIYKGApHNHA 302 7**************************************.********9669996 PP
2	WRKY	105.4	3e-33	463	521	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe RcHm_v2.0_Chr3g0447881 463 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKFVITTYEGKHNHE 521 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MEQANDVVVA ENKAKYGGGG GSVSIAERRA AKCGFNAERI NTARFRRTNT SPLPSPVERS 60 PCHLTIPPGI SPTALLDSPM MLPNSQALPS PTTGTFPLLP PSDDSSMLKS ATNEDVRRGS 120 GFDSSFMLKS QGDPKYLPGY SGFENQGSNV DYQALVLEQQ PMDFDFPMEF PEEVNAKHYA 180 VDPSNDVKNL NSVVMNESCV DLQMPHSSLA SFPKEVIHGE DVGTHQLLEG DHKGYPSLGM 240 ARNSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSFDGQIT EIIYKGAPHN 300 HAQPQPNRRA AASLGSAFSF DEMSEMGEGN RTSVKVDSDS LWAKIQSGED IKSGYDGRLD 360 GLERTSSASV VTDLSDPLSA TQGKSPGIFE SVDTPEFSST LASVDEDDQA TLRSISLGED 420 ADNEESDSKR RKKDSCMIET SIASRAVREP RVVVQIESEI DILDDGYRWR KYGQKVVKGN 480 PNPRSYYKCT SAGCLVRKHV ERASHDLKFV ITTYEGKHNH EVPAARNSNH INSSSANGHP 540 PTQSALALSR NTNIPKPETQ VQDLAPHFDR KPEFHDEYLR PTYLGNFSND LKYGATSIYQ 600 MKFPPLQNAM PYGSFGLNAP HHNVAHQAGS VASIVPDFSM SLPLNLPPSG NLGLAGFDFN 660 NGKSVYPVQP YVSGQQLQEN DLRYLKPKQE QKDDGLYDAC SLPIIDQGNA SLSPSSSLLY 720 HRMMGSYSS

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MEQANDVVVA ENKAKYGGGG GSVSIAERRA AKCGFNAERI NTARFRRTNT SPLPSPVERS  60
PCHLTIPPGI SPTALLDSPM MLPNSQALPS PTTGTFPLLP PSDDSSMLKS ATNEDVRRGS  120
GFDSSFMLKS QGDPKYLPGY SGFENQGSNV DYQALVLEQQ PMDFDFPMEF PEEVNAKHYA  180
VDPSNDVKNL NSVVMNESCV DLQMPHSSLA SFPKEVIHGE DVGTHQLLEG DHKGYPSLGM  240
ARNSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSFDGQIT EIIYKGAPHN  300
HAQPQPNRRA AASLGSAFSF DEMSEMGEGN RTSVKVDSDS LWAKIQSGED IKSGYDGRLD  360
GLERTSSASV VTDLSDPLSA TQGKSPGIFE SVDTPEFSST LASVDEDDQA TLRSISLGED  420
ADNEESDSKR RKKDSCMIET SIASRAVREP RVVVQIESEI DILDDGYRWR KYGQKVVKGN  480
PNPRSYYKCT SAGCLVRKHV ERASHDLKFV ITTYEGKHNH EVPAARNSNH INSSSANGHP  540
PTQSALALSR NTNIPKPETQ VQDLAPHFDR KPEFHDEYLR PTYLGNFSND LKYGATSIYQ  600
MKFPPLQNAM PYGSFGLNAP HHNVAHQAGS VASIVPDFSM SLPLNLPPSG NLGLAGFDFN  660
NGKSVYPVQP YVSGQQLQEN DLRYLKPKQE QKDDGLYDAC SLPIIDQGNA SLSPSSSLLY  720
HRMMGSYSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-107	WRKY family protein