PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0157801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 203aa MW: 22628.9 Da PI: 5.0707 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.2 | 9.2e-16 | 22 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+ l++ +yp+ e+++e+ +l ++++++V++WFqN +a+e++ RcHm_v2.0_Chr2g0157801 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEHIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 82 7****************96569*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 93.5 | 1.9e-30 | 21 | 83 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i +L++yG+iedkNVf+WFQN kaRerqk RcHm_v2.0_Chr2g0157801 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEHIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 83 78***************9889*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MEQQTQQQIE DGGNNQAAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEH IQEICLHLKQ 60 YGQIEDKNVF FWFQNLKARE RQKLKEFRNV RVGGSLDLNF GSTSSTDDGR SIDLNFGSTG 120 STSTDRSIDL NFGSRVGYGV DGSIMEQRGE YHQEIETLPL FPMHGEDIFG NMKTTSEGGS 180 GYGGGSRISL ELSLNSYGNA DIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-21 | WOX family protein |