PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0152301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 180aa MW: 20990.1 Da PI: 9.4029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153 | 1.4e-47 | 19 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yL kve+kk ++l++ i+++diyk++PwdLp + ++++ke+yfF++r +ky+++ r+nr+t sg+Wka RcHm_v2.0_Chr2g0152301 19 MLPGFRFHPTDEELVGFYLPVKVEKKKvsTRLDQLIRQIDIYKYDPWDLPIS-TEGDKECYFFCRRGRKYRNSIRPNRVTGSGFWKA 104 579************************65555667***************44.56799***************************** PP NAM 86 tgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 tg dk+++s+k+ l +glkk+Lv+y+g+a kg+ktdW+m+e+rl RcHm_v2.0_Chr2g0152301 105 TGIDKPIYSAKEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 149 *********7443356***************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MEVTKVKFKD DDEELAGGML PGFRFHPTDE ELVGFYLPVK VEKKKVSTRL DQLIRQIDIY 60 KYDPWDLPIS TEGDKECYFF CRRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSAKEPLEC 120 IGLKKSLVYY RGSAGKGTKT DWMMNEFRLP PNGKSSTNFL NVKDNTQEAM PFRYYMYLCT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-70 | NAC family protein |