PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0152161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 364aa MW: 41209.1 Da PI: 7.7597

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0152161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.5e-12	188	245	37	96
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l+ ++gr W+v+++y+k + + +++GW vk+n+L++gD++vF l+++ + l v + RcHm_v2.0_Chr2g0152161 188 FLRVLDGRIWSVEFTYTKEKAQ--FQGGWLTVVKDNNLEVGDVCVFVLIKDIKLLLGVLF 245 466799******77777766..9********************9987444455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MASLRPLRFC STTPHFFKII LEDTSRHKLK ILKKFVMKYG NSHFDVCIFD VSATEIDYPM 60 TMPKIEEADE DDDLSIEILE GFQPSPKTRR KCPLACPPYK KMRASLSGKA DVSSEIENTQ 120 PCDMFEKPIT NKESHRNKVE VENLENKGVD DMSAEKDGRV LGGLSGTQSL CYRSFPEDIS 180 LSCLQVTFLR VLDGRIWSVE FTYTKEKAQF QGGWLTVVKD NNLEVGDVCV FVLIKDIKLL 240 LGVLFFRTSE ATTWFLSNGE NFFLAERDGG SSSSSQTILK RTHEVVARVK PLTATEKANA 300 FKSDKPSFRI AMHPYSIHYN NVYLPNEFAK TYLTKLSSGV AILQVSDGRT WSVNFKFDHA 360 NSRA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MASLRPLRFC STTPHFFKII LEDTSRHKLK ILKKFVMKYG NSHFDVCIFD VSATEIDYPM  60
TMPKIEEADE DDDLSIEILE GFQPSPKTRR KCPLACPPYK KMRASLSGKA DVSSEIENTQ  120
PCDMFEKPIT NKESHRNKVE VENLENKGVD DMSAEKDGRV LGGLSGTQSL CYRSFPEDIS  180
LSCLQVTFLR VLDGRIWSVE FTYTKEKAQF QGGWLTVVKD NNLEVGDVCV FVLIKDIKLL  240
LGVLFFRTSE ATTWFLSNGE NFFLAERDGG SSSSSQTILK RTHEVVARVK PLTATEKANA  300
FKSDKPSFRI AMHPYSIHYN NVYLPNEFAK TYLTKLSSGV AILQVSDGRT WSVNFKFDHA  360
NSRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	1e-07	B3 family protein