PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr2g0149281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 21697.5 Da PI: 6.4948 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6e-13 | 33 | 121 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++v+ s + s+ + lp + a++ ++ + ++ed++g +W++ + + +g++ + GW+ F +++L+ g ++vF++++ s RcHm_v2.0_Chr2g0149281 33 VTVM--SGNEFSKFMELPPNVARAVSLAD-Q--STVIEDSQGLRWNIAI--SSMDGSFAFHHGWNAFSLDHDLQLGNILVFTYIRGS 112 4555..6666677799******9997763.3..4788************..999999***************************989 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 f vk++++ RcHm_v2.0_Chr2g0149281 113 HF--AVKIYDN 121 99..9999886 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence |
MGHEFKACVE CTEKCLLVHG NKSDASPVIT SFVTVMSGNE FSKFMELPPN VARAVSLADQ 60 STVIEDSQGL RWNIAISSMD GSFAFHHGWN AFSLDHDLQL GNILVFTYIR GSHFAVKIYD 120 NSGCEPCSFE TDQKKRKRDD RDSIFKGGWC YATDKSSMSK DGSGTCGCSD AEISKRLDEV 180 NGKGKAPITT QLICFKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-11 | B3 family protein |