PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0142471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26131 Da PI: 5.2031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed++ +d+vk++G g W + +r+ g++R++k++++rw++yl RcHm_v2.0_Chr2g0142471 16 KGAWAASEDQIVIDYVKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr2g0142471 69 RGNITEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNSC 113 7999******************.*********.***********975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MGESSTCYDK NEGPKKGAWA ASEDQIVIDY VKKHGVGKWG KLSRETGLKR CGKSVRLRWL 60 NYLRPGIVRG NITEDEEELI IRLHKLLGNR WSLIAGRIPG RTDNEIKNYW NSCLKRKLQQ 120 QNHLAVPRNE EIREDLSSSA AVAAAAEKNP HLTGNNVNED EDYHQHHDVD FGVGIEFEAI 180 DNNNGTGDDE HLRDDLWWNN FIMDLNDIQL DASEFQPDFP EIRLGNLW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-51 | MYB family protein |