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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0142221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 212aa MW: 23646.2 Da PI: 4.9139 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.4e-16 | 31 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++ql++L+el++ ++p+ e+++ + +l +++ ++V++WFqN +a+e++ RcHm_v2.0_Chr2g0142221 31 NRWTPTPDQLRILQELYYDraLKNPTPEQIQGICLHLkpygQIENKNVFFWFQNLKARERQ 91 7****************96579*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 94 | 1.4e-30 | 29 | 92 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtPtp+Q++iL+ely+ ++l++P+ e+iq i +L+ yG+ie+kNVf+WFQN kaRerqk RcHm_v2.0_Chr2g0142221 29 TNNRWTPTPDQLRILQELYYdRALKNPTPEQIQGICLHLKPYGQIENKNVFFWFQNLKARERQK 92 679***************9879*****************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MELQAQQPTE EGGSIQAAGS SANTPIRPTN NRWTPTPDQL RILQELYYDR ALKNPTPEQI 60 QGICLHLKPY GQIENKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGRS 120 IDLNFGSTGS TSTDRSIDLN FGLRVGYGVD GSIMEQRGEY HQEIETLPLF PMHGEDIYGN 180 MKTTSEGGSG YGGGFHISLE LSLNSYRDAD MA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 1e-24 | WOX family protein |