PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0136761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 785aa MW: 85937.8 Da PI: 7.2685

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0136761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.9	1.3e-15	449	487	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C ++C Ce+C Nk e RcHm_v2.0_Chr2g0136761 449 CKRCNCKKSKCLKLYCECFAAGVFCLDSCACENCYNKPE 487 89**********************************975 PP
2	TCR	41.7	2.4e-13	535	572	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkkskClkkYCeCf+a++ Cs C+C+ C+N RcHm_v2.0_Chr2g0136761 535 RHKRGCNCKKSKCLKKYCECFQANVGCSGACRCDCCQN 572 589**********************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MDGSPETNRV AAAAASSPAQ ASSPAVQESP FSNFLSNLTP INTVKSDSYS QRLVGTFFPT 60 PPVVFTSPHI DLERETSFLE RNDIVEAGYK ECNTTIFQNP SFEKEVQLCS ASGCIDEYLA 120 DPAKVDCTGS ADIQSSINAG KESNTEVHEV IDGSTKSEPL PTLNQAEVGL PLPSLTQIET 180 TIIEKIDKNS VDLVTRAQSR GQNTAKEVSQ HHRGIRRHLQ FETAVAQKSS NFGNHRSLCS 240 LTHDTDNLRS QSKLTNLKTL ASSHLDSKAF SSLQGVSCDT SQLSSCLCES VRSSQIGGNS 300 STSAPIRSGI GLHLNSITRS TSMSSDVLLS RKATGCLSTP DQMLEHDNRN NIEHESSSSF 360 ISVVLGQNYS SVGNDQQESQ TAAHTTFTFY STDGVPYLPC DSMHQILVDQ HSVPCEEMNA 420 SQDANKIEEL NELSQKRKRR RGAEISEGCK RCNCKKSKCL KLYCECFAAG VFCLDSCACE 480 NCYNKPEFED TVFDARQQIE SRNPLAFAPK VVKHEINSLP NIMEEADWTT PSSARHKRGC 540 NCKKSKCLKK YCECFQANVG CSGACRCDCC QNPCGTKADH EYNRAEKWET HPAEKLDTIK 600 GGNDCIKASD MDPYSPWEGL SVISNLTPLS NPCSSTRVSS ASSSMRNRTK ISQAQLQSSR 660 LQPSGTGHLK RGRSPVIFTP QVFESKGPSQ LSSDGASYER MDDDIPELLK EPSIPPKVVK 720 GSPNQKRVSP PQSRAEKLRS RSPKGLRSGR KFILQAMPSF PPLSPYSDSK AINDTRNDHK 780 GTQNN

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MDGSPETNRV AAAAASSPAQ ASSPAVQESP FSNFLSNLTP INTVKSDSYS QRLVGTFFPT  60
PPVVFTSPHI DLERETSFLE RNDIVEAGYK ECNTTIFQNP SFEKEVQLCS ASGCIDEYLA  120
DPAKVDCTGS ADIQSSINAG KESNTEVHEV IDGSTKSEPL PTLNQAEVGL PLPSLTQIET  180
TIIEKIDKNS VDLVTRAQSR GQNTAKEVSQ HHRGIRRHLQ FETAVAQKSS NFGNHRSLCS  240
LTHDTDNLRS QSKLTNLKTL ASSHLDSKAF SSLQGVSCDT SQLSSCLCES VRSSQIGGNS  300
STSAPIRSGI GLHLNSITRS TSMSSDVLLS RKATGCLSTP DQMLEHDNRN NIEHESSSSF  360
ISVVLGQNYS SVGNDQQESQ TAAHTTFTFY STDGVPYLPC DSMHQILVDQ HSVPCEEMNA  420
SQDANKIEEL NELSQKRKRR RGAEISEGCK RCNCKKSKCL KLYCECFAAG VFCLDSCACE  480
NCYNKPEFED TVFDARQQIE SRNPLAFAPK VVKHEINSLP NIMEEADWTT PSSARHKRGC  540
NCKKSKCLKK YCECFQANVG CSGACRCDCC QNPCGTKADH EYNRAEKWET HPAEKLDTIK  600
GGNDCIKASD MDPYSPWEGL SVISNLTPLS NPCSSTRVSS ASSSMRNRTK ISQAQLQSSR  660
LQPSGTGHLK RGRSPVIFTP QVFESKGPSQ LSSDGASYER MDDDIPELLK EPSIPPKVVK  720
GSPNQKRVSP PQSRAEKLRS RSPKGLRSGR KFILQAMPSF PPLSPYSDSK AINDTRNDHK  780
GTQNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	435	441	QKRKRRR
2	436	441	KRKRRR
3	437	441	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-64	CPP family protein