PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0136531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 273aa    MW: 30999.2 Da    PI: 9.5751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0136531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-105781126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            ykt+lC++f r G C yG+ C +aHg
  RcHm_v2.0_Chr2g0136531 57 YKTRLCNNFKR-GRCLYGEACLYAHG 81
                            9**********.*************8 PP
2zf-CCCH246.6e-08114136426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +lC+ f+  G C yG++C+F H+
  RcHm_v2.0_Chr2g0136531 114 RLCKLFLNEGKCTYGEKCRFRHV 136
                             79******************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MSNLQSTCQF FTPFPREGQE FEAVSDTEPH QAFKKPRVSK VGSDSMVIER RYKWLHYKTR  60
LCNNFKRGRC LYGEACLYAH GIEEIRNTLG SSANEKGMLG RTEYARHRTC DELRLCKLFL  120
NEGKCTYGEK CRFRHVIPKS IRDESVIILT SGSKGSQISG SGQFGGKRSL GLDVDTNGVS  180
GGRHFRQQSS VAAGRGMLSN TCMASGSFAH GHAVLRKLCG YTTRETKHLK TFTTSRELQV  240
TDGNFNWNEL EKMSRIYADW IEEIPLVHRK MEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-11C3H family protein