PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G19360.1
Common NameMLD14.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 386aa    MW: 43121.4 Da    PI: 7.3394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G19360.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09105129126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+ C  f++ GtC+ G+ C+FaHg
  AT3G19360.1 105 YKTRMCAKFRA-GTCRNGELCNFAHG 129
                  9**********.*************8 PP
2zf-CCCH19.61.7e-061942081125
                  GTS.--TTTTT-SS-S CS
      zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                    G +C+yGdrC+F+H
  AT3G19360.1 194 F-GeECPYGDRCNFIH 208
                  5.449*********** PP
3zf-CCCH437.6e-14270296127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC+ f  tG+C++Gd+C+FaHg+
  AT3G19360.1 270 WKTRLCMKFDITGQCPFGDKCHFAHGQ 296
                  8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-15102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793104131IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4104130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6183209IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036183210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455183211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8185209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-9265300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-15267299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169269297IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7269296IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11270296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QPSQQLQPAL  60
KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT ANIFYKTRMC AKFRAGTCRN  120
GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ  180
KIILRMKLCR KFCFGEECPY GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT  240
ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH  300
NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS  360
KKINRIYGDW IDDLPVGQKS TKPVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154164RERERERERER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.229940.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453387080.0
Genevisible258024_at0.0
Expression AtlasAT3G19360-
AtGenExpressAT3G19360-
ATTED-IIAT3G19360-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G19360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9LT81
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G19360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001327691.10.0Zinc finger (CCCH-type) family protein
RefseqNP_566631.10.0Zinc finger (CCCH-type) family protein
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A178VLX60.0A0A178VLX6_ARATH; Uncharacterized protein
STRINGAT3G19360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Representative plantOGRP20451737
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Hilson P, et al.
    Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.
    Genome Res., 2004. 14(10B): p. 2176-89
    [PMID:15489341]
  4. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  6. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]