PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0128781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26962.6 Da PI: 8.4628 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.9 | 3.3e-33 | 16 | 108 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++r+kC+++C+lap fp e++++f++vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l RcHm_v2.0_Chr2g0128781 16 ACAACKHQRKKCNEGCTLAPFFPVERNREFQAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIFDEL 102 7*****************************************************************************999888888 PP DUF260 88 eqlkae 93 + k++ RcHm_v2.0_Chr2g0128781 103 KMYKNH 108 877754 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MHRKNNGTAG AGAVPACAAC KHQRKKCNEG CTLAPFFPVE RNREFQAVHK VFGVSNVTKM 60 VKNANEANRR KVVDSLVWEA LCRQKDPVLG PYGEYRMIFD ELKMYKNHEN QTVPLQVQKG 120 MCYKSLTDLV AWNYETNGIS DGINGGNGIT TTNNNLDYDL QVNENVRINS VPPYGYPLTC 180 EQEIAAEKIK QVKIAADSIV VPVVHQQGHS INNINQQYYI SGQLNQHIGK PLERTIWEGG 240 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-38 | LBD family protein |