PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0128221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family VOZ
Protein Properties Length: 445aa    MW: 49677.4 Da    PI: 5.1722
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0128221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ361.23.8e-1112014113217
                     VOZ   3 psaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 
                               +flgp calwdc+rpa+     +dyc +fhat al+eg+pg +pv+rp+gi+lkd++lf+al a  qgk vgip+cegaat ksp
  RcHm_v2.0_Chr2g0128221 201 EPSFLGPTCALWDCSRPAE---CGKDYCCNFHATSALEEGQPGKSPVFRPRGISLKDNALFDALIAWNQGKAVGIPNCEGAATLKSP 284
                             567**************96...5689************************************************************* PP

                     VOZ  90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeine 176
                             wn ++lf+ls+leget+rewlffdkprraf +gnr+qrslpd+sgrgwhesrkq+mkef+g+krsyymdpqps   +whl+eye+n+
  RcHm_v2.0_Chr2g0128221 285 WNDSKLFNLSFLEGETVREWLFFDKPRRAFGTGNRRQRSLPDHSGRGWHESRKQIMKEFDGQKRSYYMDPQPSIDQDWHLFEYEVNN 371
                             *************************************************************************************** PP

                     VOZ 177 ldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217
                             +da+alyrlelk    kks+kgkvs+  +adlqkk+g+lta
  RcHm_v2.0_Chr2g0128221 372 SDACALYRLELKFGSVKKSPKGKVSN-EVADLQKKMGKLTA 411
                             ************************86.59**********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MIKDSKGKCE SSSHKLLKEK AKTRVDYLQA FLTNLKSATK ESRTDDNATL EEVNKMLQEW  60
KAELNEPSPA SSLLADSLGS FSEELARLLR TDEEDDATSP LKELLPTKPE SDLQNLHLGN  120
LVQFTEDFYV SPEPQETFQE FYQCGDTASG FQNLMVDNSG FDHHFDFHQY VNEGPFIGGN  180
DVKQPEEDAA PSVLPVISPT EPSFLGPTCA LWDCSRPAEC GKDYCCNFHA TSALEEGQPG  240
KSPVFRPRGI SLKDNALFDA LIAWNQGKAV GIPNCEGAAT LKSPWNDSKL FNLSFLEGET  300
VREWLFFDKP RRAFGTGNRR QRSLPDHSGR GWHESRKQIM KEFDGQKRSY YMDPQPSIDQ  360
DWHLFEYEVN NSDACALYRL ELKFGSVKKS PKGKVSNEVA DLQKKMGKLT AEVATDGANN  420
AKGKTKKKAD AGNIFSSQSP MTSTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-123VOZ family protein