PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0127381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 110aa MW: 12749.5 Da PI: 5.097 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.2 | 7.8e-15 | 31 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++ql++L+ l++ + p+ e+++e+ +l ++++++V++WFqN +a e++ RcHm_v2.0_Chr2g0127381 31 NRWTPTPDQLRILQVLYYDkvLKCPTPEQIQEICLNLqqygQIEDKNVFFWFQNLKALERQ 91 7****************96679**********************************99986 PP | |||||||
2 | Wus_type_Homeobox | 91 | 1.2e-29 | 29 | 92 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtPtp+Q++iL+ ly+ + l+ P+ e+iq+i +L++yG+iedkNVf+WFQN ka erqk RcHm_v2.0_Chr2g0127381 29 TNNRWTPTPDQLRILQVLYYdKVLKCPTPEQIQEICLNLQQYGQIEDKNVFFWFQNLKALERQK 92 679***************9868899**************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MELQAQQPTE EGGSIQAARS SANTPIRPTN NRWTPTPDQL RILQVLYYDK VLKCPTPEQI 60 QEICLNLQQY GQIEDKNVFF WFQNLKALER QKLKEFQNVP VGGSLDLLWC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 9e-24 | WOX family protein |