PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0126751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 595aa    MW: 66080.9 Da    PI: 5.238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0126751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.41.6e-2441431128
                     NAM   1 lppGfrFhPtdeelvveyL..kkkvegkk...leleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknrat 78 
                             +p+GfrFhPtd+el+ +yL  k+kv++ +     ++ v++e+d+y ++ePw++ +    ++  +++++fF+k +k +++g+r nr++
  RcHm_v2.0_Chr2g0126751   4 VPVGFRFHPTDDELIRHYLylKNKVSKGEdeaAAAAAVVPEFDLYgETEPWNIWEahgGADLYDQDLFFFTKLKKVNPHGTRINRKI 90 
                             599*************9872256666666554344457*****99568*****74233333366799******************** PP

                     NAM  79 ksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +g+W++   ++++++      +++ +g k+ + +   ++ + ++  W m+ey+l
  RcHm_v2.0_Chr2g0126751  91 GTGTWSEGEPSRPIFVGeknkkNKTPIGRKRKFRYE--NKLSDQHGCWYMEEYSL 143
                             ***************97555444444********98..45555799*******98 PP
2NAM27.96.7e-09188220234
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevi 34 
                             p+GfrFhPtd+el++++L +k +gk  +  ++i
  RcHm_v2.0_Chr2g0126751 188 PVGFRFHPTDQELICYFLYNKNKGKGGRGLSFI 220
                             89********************99985554444 PP
3NAM392.4e-1237047230128
                     NAM  30 leevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvglkktLvfyk 110
                             ++++++e+d++ ++ePw++ +    ++  +++++fF++ +k +++g+r  r + + g+W++   +k++++  +g+++g k+ L + k
  RcHm_v2.0_Chr2g0126751 370 ENQFLHEFDLFgSTEPWEIWEmfrGAELCNQDLFFFTQLKKVNPKGSRIGRkVGSGGTWSEGDVSKPIVDDrTGNQIGRKRKLRYEK 456
                             33468999987367*****75233333355689******************5556899**********99878999*********98 PP

                     NAM 111 grapkgektdWvmheyrl 128
                               +p+  ++ W ++ey+l
  RcHm_v2.0_Chr2g0126751 457 VGSPH--HACWYLDEYSL 472
                             77777..8********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    
MAYVPVGFRF HPTDDELIRH YLYLKNKVSK GEDEAAAAAA VVPEFDLYGE TEPWNIWEAH  60
GGADLYDQDL FFFTKLKKVN PHGTRINRKI GTGTWSEGEP SRPIFVGEKN KKNKTPIGRK  120
RKFRYENKLS DQHGCWYMEE YSLDGIKSAD YVICRLRENN RSGGGTGGNR DLLAISVAAS  180
MEASGPIPVG FRFHPTDQEL ICYFLYNKNK GKGGRGLSFI AEEVAAAAEE EEEEIKALPA  240
PEEPPLETAA AEAEAEESKD NGKEEEGHAP PAEAEEEKRK NGGGGDAGAE GEKEKTGQVL  300
ALVSVEEEEE KKKKKEKEKE KEKKEGEGQA APLLLLEYMK NKDEDEKGLK LVAREEEAEV  360
VEAVEVCKKE NQFLHEFDLF GSTEPWEIWE MFRGAELCNQ DLFFFTQLKK VNPKGSRIGR  420
KVGSGGTWSE GDVSKPIVDD RTGNQIGRKR KLRYEKVGSP HHACWYLDEY SLLDADIGDY  480
VICRLRKNDK LAAAAFSSGE PIHSRKRKST PSTTAAESKH PPATPQESKH PSTTAGESKP  540
EEDSSKAKRK RTTGLTQVEE AAADVLMNMA NSTLNNSTLK LFGIEIGSTP TIGGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312342KKKKEKEKEKEKKEGEGQAAPLLLLEYMKNK
2504509SRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.25e-16NAC family protein