PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0124171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 203aa    MW: 22362.6 Da    PI: 4.904
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0124171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.25.1e-122282357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+ +e+  +l    ++++++V++ FqN +a+e++
  RcHm_v2.0_Chr2g0124171 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQNQEICLHLkqygQIEDKNVFFSFQNLKARERQ 82
                            8****************96569*************************************97 PP
2Wus_type_Homeobox833.6e-272183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+ q+i  +L++yG+iedkNVf+ FQN kaRerqk
  RcHm_v2.0_Chr2g0124171 21 SNRWAPTPPQLRILKGLYYdKGFKYPTPEQNQEICLHLKQYGQIEDKNVFFSFQNLKARERQK 83
                            79***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MELQAQQPTE EGGSIQAAGS SNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ NQEICLHLKQ  60
YGQIEDKNVF FSFQNLKARE RQKLKEFRNV RVGGSLDLNF GSTSSTDDGR SIDLNFGSTG  120
STSTDRSIDL NFGSRVGYGV DGSIMEQRGE YHQEIETLPL FPMHGEDIFG NMKTTSEGGS  180
GYGGGSRISL EPSLNSYGNA DIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-19WOX family protein