PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0121311

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 964aa MW: 106881 Da PI: 6.1519

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0121311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.5	1.5e-29	590	641	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ RcHm_v2.0_Chr2g0121311 590 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKINKV 641 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MEYQFSSGEG KDQGSSSGAE VEGLVPLRNS ISEDMFINIA EFMNFDSYAG WCSSPGTMEQ 60 IAAAYPSVSY APLDALNFTQ QNGGTLPVTE DGGTFDEAGS SFDCGDKIVF RQTQYRASTD 120 SHHTHDAAAK PKNGSFQQNN VMDMADYVIP RPYGWSLNEK MLKALSFFKE SFGGGILAQV 180 WVPMKHGDHS FLSTCEQPYL LDNVLKGYRD VSRMFTFAAE ETQGTSLGLP GRVFVSKVPE 240 WASNVSYYNK DEYLRVEHAA NHQVRGSIAL PVFDLNSEKS CCGVFELVST KDKLNFDAEM 300 KMVCEALQAV KLRTTTPPRL HPQCLSKNQR VALTEITDVL RAVCHAHTLP LALTWIPCCY 360 SEGDAEEIRR VRVRGGITKS NEKCILCIEE TACYINDRAM QGFVHACAEH HLEEGNGIAG 420 KALQSNHPFF IHDVKVYDIY DYPLVHHARR YGLNAAVAIR LRSTYTGDDD YILEFFLPVN 480 IKGSSEQQLL LNNLSGTMQR MCKSLRTVSD AELAGVEGSN TGFQREAVSN APPIPRRDSQ 540 TTSSDSEMKL TEKMPSNVYN RRDGGVKIDF PSEQAPLGSR RQVEKKRSTA EKNVSLSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI PRWPSRKINK VNRSLKKIQT VLDSVQGVEG 660 GLKYDPTTGG FVATGSTIQE FDAQKNLFFS EKNLPAQNIV PVPKYPVSVP SMFCNDGKSL 720 DIMLEEDGCC MNERMLVPSA HQAKEEVSKQ HIPVVDCSMD SKPIAIDFGS CQPTDHDILP 780 HTCPESAFGV SYLVKEVNKW DQSKGSPKLE NSDCHVVSQS SSSSLTHSSN SSGSMMHGCS 840 SSSQSFDERN YPKVKARNDE NGSKIIVKAT YKEDTIRFKF EPSGGCLKLY EEVAKRLRLQ 900 DGTFQLKYLD DEQEWVMLVS DADLQECLEI LDDIGTRSVK FMVRDIPFDL SSSGSSNCFL 960 APGS

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MEYQFSSGEG KDQGSSSGAE VEGLVPLRNS ISEDMFINIA EFMNFDSYAG WCSSPGTMEQ  60
IAAAYPSVSY APLDALNFTQ QNGGTLPVTE DGGTFDEAGS SFDCGDKIVF RQTQYRASTD  120
SHHTHDAAAK PKNGSFQQNN VMDMADYVIP RPYGWSLNEK MLKALSFFKE SFGGGILAQV  180
WVPMKHGDHS FLSTCEQPYL LDNVLKGYRD VSRMFTFAAE ETQGTSLGLP GRVFVSKVPE  240
WASNVSYYNK DEYLRVEHAA NHQVRGSIAL PVFDLNSEKS CCGVFELVST KDKLNFDAEM  300
KMVCEALQAV KLRTTTPPRL HPQCLSKNQR VALTEITDVL RAVCHAHTLP LALTWIPCCY  360
SEGDAEEIRR VRVRGGITKS NEKCILCIEE TACYINDRAM QGFVHACAEH HLEEGNGIAG  420
KALQSNHPFF IHDVKVYDIY DYPLVHHARR YGLNAAVAIR LRSTYTGDDD YILEFFLPVN  480
IKGSSEQQLL LNNLSGTMQR MCKSLRTVSD AELAGVEGSN TGFQREAVSN APPIPRRDSQ  540
TTSSDSEMKL TEKMPSNVYN RRDGGVKIDF PSEQAPLGSR RQVEKKRSTA EKNVSLSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI PRWPSRKINK VNRSLKKIQT VLDSVQGVEG  660
GLKYDPTTGG FVATGSTIQE FDAQKNLFFS EKNLPAQNIV PVPKYPVSVP SMFCNDGKSL  720
DIMLEEDGCC MNERMLVPSA HQAKEEVSKQ HIPVVDCSMD SKPIAIDFGS CQPTDHDILP  780
HTCPESAFGV SYLVKEVNKW DQSKGSPKLE NSDCHVVSQS SSSSLTHSSN SSGSMMHGCS  840
SSSQSFDERN YPKVKARNDE NGSKIIVKAT YKEDTIRFKF EPSGGCLKLY EEVAKRLRLQ  900
DGTFQLKYLD DEQEWVMLVS DADLQECLEI LDDIGTRSVK FMVRDIPFDL SSSGSSNCFL  960
APGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein