PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0120751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 265aa    MW: 30578.1 Da    PI: 8.4757
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0120751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-12142230181
                             EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.T CS
                      B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.e 76 
                             f+k+lt sdv    +rl ++k+ +++h         ++  +e++++t +d+ g+++ +k++ + ++  +vlt+GWk F+++++L  +
  RcHm_v2.0_Chr2g0120751 142 FEKQLTCSDVRDDqSRLAMSKEDVQKHlmpllneseDL--NEGIDVTTYDLAGKEYPMKFKTWVSK-IHVLTGGWKAFCRDHQLVqT 225
                             89*******9987799**************99985444..4889****************989987.789*************9834 PP

                             T-EEE CS
                      B3  77 gDfvv 81 
                               fv+
  RcHm_v2.0_Chr2g0120751 226 QHFVT 230
                             44444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MSLGKSSRAP MTSLTDEKDI KAAFSLCFMK HVVLDSEKEI QKLEDTKRKS VGHIRVYPNP  60
ETKPRALQIE KQEEDNVNVA QGLSRTQQLQ QGPKRKAVHT EEQEAMNEAK PQQGLFYGDY  120
TPPNLPPVPS LHKLIEICSE PFEKQLTCSD VRDDQSRLAM SKEDVQKHLM PLLNESEDLN  180
EGIDVTTYDL AGKEYPMKFK TWVSKIHVLT GGWKAFCRDH QLVQTQHFVT VWMFRNIATG  240
NLCFVIEVRR LPVFETIKRR RIRQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258262KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-28B3 family protein