PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0118801

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRAS

Protein Properties

Length: 356aa MW: 40176 Da PI: 4.7422

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0118801	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	130.2	2.3e-40	118	275	2	162
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +elL++ Aeav+s++ a++++a+l++l s++g +++++la++ft++L+ + + ++ p e + ++ +e++++++++ RcHm_v2.0_Chr2g0118801 118 TELLFAGAEAVESQNWVFASNIIAKLNTLlsGSENGdNSFNKLATFFTKGLHYKTIN------SIEVPHEPAVSRNTETMSSFQMLL 198 789***********************9775667768**********99888......34455666666789999*** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetg 162 e+sP++kf+h+taNqaIlea++++e +H+iDfdi++G QWp+L+ La R+ + +sl++T++ + +s+ ++tg RcHm_v2.0_Chr2g0118801 199 ELSPFVKFAHFTANQAILEATQEDEDIHVIDFDIMEGSQWPSLMVDLARRKgRRCASLKVTAITVDQ-QSTALAQQTG 275 ***********************************************55567*****9955.3444444554 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEVELIDHPF NPSFDLYDCS FESDSSFQTS DLFTRTTNVD QNSDHECLNR MLQIESQLMD 60 IDSSISSGSD VIGLDGVVDS EFASYISEEA PENVRVSTEG NSLLKEIQID LLEESSLTEL 120 LFAGAEAVES QNWVFASNII AKLNTLLSGS ENGDNSFNKL ATFFTKGLHY KTINSIEVPH 180 EPAVSRNTET MSSFQMLLEL SPFVKFAHFT ANQAILEATQ EDEDIHVIDF DIMEGSQWPS 240 LMVDLARRKG RRCASLKVTA ITVDQQSTAL AQQTGRSRAA HELDWIGFDP KPSLCQSERF 300 MHFEQPTIRK NKHSPIRSNS IKDGLVRSVR RFNPNNIIYK KKIIVKFNLN NKNYVK

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEVELIDHPF NPSFDLYDCS FESDSSFQTS DLFTRTTNVD QNSDHECLNR MLQIESQLMD  60
IDSSISSGSD VIGLDGVVDS EFASYISEEA PENVRVSTEG NSLLKEIQID LLEESSLTEL  120
LFAGAEAVES QNWVFASNII AKLNTLLSGS ENGDNSFNKL ATFFTKGLHY KTINSIEVPH  180
EPAVSRNTET MSSFQMLLEL SPFVKFAHFT ANQAILEATQ EDEDIHVIDF DIMEGSQWPS  240
LMVDLARRKG RRCASLKVTA ITVDQQSTAL AQQTGRSRAA HELDWIGFDP KPSLCQSERF  300
MHFEQPTIRK NKHSPIRSNS IKDGLVRSVR RFNPNNIIYK KKIIVKFNLN NKNYVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	8e-21	GRAS family protein