PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0118251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 388aa    MW: 41390.5 Da    PI: 6.9552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0118251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20194243255
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a++ a+++++g
  RcHm_v2.0_Chr2g0118251 194 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAQAYDTAALRFRG 243
                             8********.**********66.....56*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MCFLKVANPS RDRDDERAAA AGQGNETDQT HEQRDLIEEW LLFEPLLFSQ QQRRGAGGSS  60
GGGGAGGILA SSSMLLRLDR EREMSAMVSA LTHVVTGEEQ TRFDVVNGSD SPAGNGLCGG  120
VGSKREREEE GGGGGQNMSE SVSRLPQQGS PSSSSVFPEN SITRTRRTTS TTPPVQTAYE  180
YSAPQLSEQP IRRKYRGVRQ RPWGKWAAEI RDPFKAARVW LGTFDTAEAA AQAYDTAALR  240
FRGNKAKLNF PENVRLRSLP SSAAENPMTT QPTVSGSSNA LLSIPTSTEP IVHSQAAASF  300
QQQRPMNLYD QMVLLSSSSS PSATSSSTLA SSVSSASSSP PPPAFSSLFS AQATSPVQLR  360
QPTGDQSGGA DFSVQQQWST SSGHYSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-28ERF family protein