PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0112311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 328aa    MW: 37161.9 Da    PI: 5.1683
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0112311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1958111356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  RcHm_v2.0_Chr2g0112311  58 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                             56689************************************************9 PP
2HD-ZIP_I/II133.67e-4357149193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++++L
  RcHm_v2.0_Chr2g0112311  57 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKISYDSLQHDNQAL 143
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                             ++e+ke
  RcHm_v2.0_Chr2g0112311 144 HKEIKE 149
                             ***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MKRLGSSDSM GALISICPTT TDEHSPRNNH VYSRDFQSML DGLDEEGCVE EAGHVAEKKR  60
RLSVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDSLK ISYDSLQHDN QALHKEIKEL KAKVQEENTE SNHSVKEEQM VLAKESSYKV  180
VMEQSKPQSP DTSGPVSESK ELNFESFNNT NSNGAVGVEV SLFPDFKDGS SDSDSSAILN  240
EDHNSPNGTI NHHHQLMSAS NSLKFNCSAS SSSPSSSSMN CFQFQKSSYQ PQFVKIEEHN  300
FFSSEEACNF FSDEQAPSLQ WYCPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15887KKRRLSVEQVKALEKNFEVENKLEPERKVK
2106114RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.17e-80HD-ZIP family protein