PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0112221

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 331aa MW: 37170.9 Da PI: 7.4248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0112221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	121	172	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+ +N+ ++ Lr+++P + ++++ + a+i A++++k+L+ RcHm_v2.0_Chr2g0112221 121 QRITHIAVERNRRKLMNDYLAALRSMMPAS---YAQRGDQASIIGGAINFVKELE 172 799*************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MTLEAVVFQP DPFSCGNGLE GSRSWDHGFG FGGDDDQQEK GYAQHDMLNN GNIVGQGLMG 60 YCSPSQVRMQ SVNTGNSNST PETCTGNFNF NNSFSSPMAT TGRRKRRRTR NIKNKEEVET 120 QRITHIAVER NRRKLMNDYL AALRSMMPAS YAQRGDQASI IGGAINFVKE LEQLLQSLEV 180 GRRTKQSHLD LASIFSNFFT FPQYSTCSST NTHGHGHSEY MNNNLVHPHE IMGEKRSGAI 240 ADVEVTMVES HANIKVLLKR HPRQLLKMVV GLHSLRLMIL HLNVTTMDSM ILYSFSVKVE 300 DNSQLTSMND IAADVYEMVG RIQEEAQFLL Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	108	RKRRR
2	104	109	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	1e-72	bHLH family protein