PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0112031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 272aa    MW: 29328.2 Da    PI: 7.1462
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0112031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.41.1e-3062117359
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                             ++rY+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e++e
  RcHm_v2.0_Chr2g0112031  62 ACRYRECLKNHAVGIGGHALDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKETDE 117
                             79**************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MEFEDQEEHD EEMEMEPSYD SLVNNNGGGG GGGRVRMASS AAEAAASAAA QLQQQQQQTR  60
RACRYRECLK NHAVGIGGHA LDGCGEFLAA GAEGTLDALK CAACNCHRNF HRKETDEPYG  120
QLVPHQGHVS GHHSHHHGGF GHPQFSASGG YYRTPGGYLH VTTQHRPLAL PSTSGGGGTD  180
QDDDMSNPSG GGGGGGSGFG MGMGTTSSKK RFRTKFSQEQ KERMLELADR LGWRIQKQDE  240
AAVQSFCDET GVKRHVLKVW MHNNKHTLGK KP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-57ZF-HD family protein