PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0109131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 39936.7 Da PI: 7.5688 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ ++G+g +W + ++++g++R++k+c++rw++yl RcHm_v2.0_Chr2g0109131 14 KGPWSPEEDAKLKSYIDKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr2g0109131 69 GGFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MGKAPCCDKT KVKKGPWSPE EDAKLKSYID KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQNR KAAASLKQEI KRSSTTTNFH LPPDDFVNQV NPYWAPELPV VLPVMSYQTH 180 DAQVLDDHQA SIKNMLIKLG GRFSDTTNSM YSPIDHISST SSHQFYQNSG IDHMLACSPA 240 ANSNYAQLGP SPSPSPTMFH GVDHQSDLEA ELSELIFGNS QPHQQYDGLA GFYQMETLNN 300 GSTGVTTSTS AESEISWGDI SSLVYSTTTP LVSEYENSCQ QGVRPSDSAF AESTYFGMK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-80 | MYB family protein |