PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0108031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 510aa    MW: 57344.2 Da    PI: 5.1298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0108031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.15.9e-1061285093374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lLle A+a+++++ +++q+l++ l+el sp+gd+ q+l++yf++AL +r+++s++++y++l + ++++ + +++ +++  f+evsP
  RcHm_v2.0_Chr2g0108031 128 DLLLETARAIADKNSARVQQLMWMLNELGSPYGDTDQKLTSYFLQALFSRMTDSGDRCYRTLVSASEKTCSFESTRKMVLKFQEVSP 214
                             68************************************************************8777775554444455556****** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakf 168
                             + +f+h+++N aI+ea++ge ++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T ++ +++g         ++ ++e+g r++kf
  RcHm_v2.0_Chr2g0108031 215 WTTFGHVACNGAIMEAFDGEAKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTSIVISRAGdgsagvgaTQKVMKEIGARMEKF 301
                             **********************************************************99888789999**999************* PP

                    GRAS 169 Aeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251
                             A+ +gvpf+fn++ ++ +l++l+l +L+v+ +Eala+n+v +lh+++    ++ ++rd ++++++sl+P++++vve+ead++ +   
  RcHm_v2.0_Chr2g0108031 302 ARLMGVPFKFNAIQHSgDLAELNLADLDVRDDEALAINCVGSLHSIV----AVGNRRDYLISAFRSLKPRIITVVEEEADLDVGvdg 384
                             *************6666*****************************8....8888999********************998655566 PP

                    GRAS 252 .sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                              +F+++f e+l+++ + f++l+++++r+s+er ++Er+  gr+iv++vac+  +++er+e++ +W++r++ aGF+p ++s+++ +++
  RcHm_v2.0_Chr2g0108031 385 fDFVQGFQECLRWFRVYFEALDESFARTSNERLMLERA-AGRAIVDLVACAPPDSVERRESATSWSRRMHGAGFSPTSFSDEVCDDV 470
                             69************************************.************************************************ PP

                    GRAS 338 klllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                             ++llr++k +g+++    ++ + ++l Wkd+p+v++SaWr
  RcHm_v2.0_Chr2g0108031 471 RALLRRYK-EGWSMTqcgDSVAGIFLSWKDQPVVWASAWR 509
                             ********.7766663435567778**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MDTLFRLVTL QQQQQQQQQQ QQSDQSFNSS TRTTTTTSSS SRSFTHHPQH HQHYPQQNDV  60
EECFNFFMDE EDFSSSSSKA HYYPTPPTPT PPPPLTTTTT TPTPTDFSFS PAHDLLNFEF  120
SSPKWAPDLL LETARAIADK NSARVQQLMW MLNELGSPYG DTDQKLTSYF LQALFSRMTD  180
SGDRCYRTLV SASEKTCSFE STRKMVLKFQ EVSPWTTFGH VACNGAIMEA FDGEAKLHIV  240
DISNTYCTQW PTLLEALATR TDETPHLRLT SIVISRAGDG SAGVGATQKV MKEIGARMEK  300
FARLMGVPFK FNAIQHSGDL AELNLADLDV RDDEALAINC VGSLHSIVAV GNRRDYLISA  360
FRSLKPRIIT VVEEEADLDV GVDGFDFVQG FQECLRWFRV YFEALDESFA RTSNERLMLE  420
RAAGRAIVDL VACAPPDSVE RRESATSWSR RMHGAGFSPT SFSDEVCDDV RALLRRYKEG  480
WSMTQCGDSV AGIFLSWKDQ PVVWASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein