PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0106671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 317aa MW: 34592.7 Da PI: 8.6447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0106671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.5	7.4e-19	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l +v+++G+++W++I++ ++ gR++k+c++rw + RcHm_v2.0_Chr2g0106671 15 KGPWSPEEDDALQSLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60 79****************************.*********985 PP
2	Myb_DNA-binding	55.6	1.3e-17	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ RcHm_v2.0_Chr2g0106671 69 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 111 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MAVNRKEMDR MDRIKGPWSP EEDDALQSLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ 60 LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSSMS 120 DDGDGNGNVF GGGYDGNFHV QPPLKRSVSA GSGVPVSTEL FMNPGSPSGS DVSDSSVQVM 180 SPSHVYRPVA RAGGVLPPVE TTSSSNNNNN NSHINLNSDP PTSLSLSLPG VDSCEVSNRV 240 AATDSTIQNQ AHPAPAPVSD PMRSFPAELL ELMQGMIKKE VRSYMEGLEQ SGFGMMKQQN 300 DGFRNVAVKR IGISRIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-75	MYB family protein