PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0105291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 520aa    MW: 58625.8 Da    PI: 8.4492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0105291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-19162252199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k l++s+v +  ++ lp  f+++h   +e+++t+tlede gr+++ k+i +k++    l++GW++F+ +++L egD++vF+l++ 
  RcHm_v2.0_Chr2g0105291 162 FVKSLLRSHVASCFWMGLPSLFCKSHL--PEKDITMTLEDEGGRQFQSKYIACKTG----LSAGWRQFAASHKLLEGDVLVFQLVEP 242
                             89************************5..45889****************777776....***********************9875 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                              +f  +v v+r+
  RcHm_v2.0_Chr2g0105291 243 AKF--KVYVIRS 252
                             555..8888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MWLLLSLFFL FLGSESETSP SVSSEESNIM GRNTRKGTPQ RAEKKENKPK TPPSKEEVLS  60
RLTKPKPKPK STRPVATPPK KTNKSNEKEV EHSLPMKELS NTQVNKMLEQ AALGHSVKST  120
PLSNTQYDFP IDGSPSRGQA KSSAIIRAQE VRSKLEPLFP SFVKSLLRSH VASCFWMGLP  180
SLFCKSHLPE KDITMTLEDE GGRQFQSKYI ACKTGLSAGW RQFAASHKLL EGDVLVFQLV  240
EPAKFKVYVI RSNDFTEVDG ALGLLSLDAQ TKYNDADKDN AETGAVACNE SNRKRTKSPP  300
EVVQKKKKID LPVEHSEIDS EEVDSEVVES SRLPGTTLQF EDIKSFENFN ILVNGLLVDS  360
EFPEDIRRKY YKLCRSQNAF LHENVMKGTY YKLIVGAIFE TVHIVDAIKA CQITTTQDDF  420
VCWDKYLRAF ELLGMNVGFI RARLCRLANL AFDSEDAMDA KTYKEARKER ARAGLGLRSI  480
ETKIQGLREA CHEFSSAIES LRSKAEVYNQ RFQEEVTAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293308RKRTKSPPEVVQKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-38B3 family protein