PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0104791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 316aa    MW: 34849.1 Da    PI: 7.5593
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0104791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.81.9e-4371061100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lqq+l
  RcHm_v2.0_Chr2g0104791   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELSATQREDAVNSLAYEAEARLRDPVYGCVGLISILQQRL 93 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             +q++ +l  +++e
  RcHm_v2.0_Chr2g0104791  94 KQVQLDLYNARKE 106
                             ****999888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELSATQR  60
EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQLDL YNARKELATY MGPQAMLSIL  120
QPTSYMPQQI QGGGNASSSS VVVPYNMSPM MGIPTGAASG SGGQLMVREQ QQQQQIFEAQ  180
QFLAAREQQE MLRSFEQNKQ GALHSQEPPH HLRFNSGFDS VTGTGLTQMS PTSAAANNAN  240
ISPALALGFD PNPYQIQPQQ QQQEPHHHHH LQLQALLQSQ QQPQQQQQSQ QQQPPQLLPQ  300
KVEGEDGRSR SVGPSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-84LBD family protein