PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0103551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 292aa MW: 33692.6 Da PI: 9.2882 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.3 | 5.7e-18 | 15 | 105 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv d ++s l +p kf++++g sk ++l+ +sg +Wev++ + ++++ +++kGW+eF k L++g f++F+++g+ RcHm_v2.0_Chr2g0103551 15 FFKVI--VDETSSIKLKIPPKFVKKYGDY--LSKSVRLKLPSGCQWEVEV--TESDSEAWFEKGWQEFFKFYSLDSGHFLLFTYQGN 95 78888..89999999***********866..8889***************..**********************************9 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s f v +f++ RcHm_v2.0_Chr2g0103551 96 SMF--EVCIFDR 105 999..9999987 PP | |||||||
2 | B3 | 35.8 | 1.5e-11 | 202 | 291 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +++++ + l +p +f+ ++ + ++ l+l+ r W+ l+ + ++ + GW Fvk+n+L +gD+++F+l++ ++ l RcHm_v2.0_Chr2g0103551 202 MQPHYIHNYTLNIPLRFIMSFTKHGRQ--FLKLQ-VGDRFWSACLNLSEIHRTAKINHGWHVFVKENHLSVGDVCIFELMKVNDLVL 285 577788888899*****9888544233..34443.36699999998888889999*************************9999999 PP EEEEE- CS B3 93 vvkvfr 98 +v++fr RcHm_v2.0_Chr2g0103551 286 KVHMFR 291 999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence |
MSAFRSTFSA TTPRFFKVIV DETSSIKLKI PPKFVKKYGD YLSKSVRLKL PSGCQWEVEV 60 TESDSEAWFE KGWQEFFKFY SLDSGHFLLF TYQGNSMFEV CIFDRTATET EYPIIIDDSY 120 VEDDNSIEIL NDFTPCSKTR DKSPSPSARP SRRKRTLGPT SEAKMKGKED DFSRKKDGGG 180 SSKALERAKA FKSENPSIMI AMQPHYIHNY TLNIPLRFIM SFTKHGRQFL KLQVGDRFWS 240 ACLNLSEIHR TAKINHGWHV FVKENHLSVG DVCIFELMKV NDLVLKVHMF RG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 176 | KMKGKEDDFSRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 3e-25 | B3 family protein |