PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G01580.1 | ||||||||
Common Name | T15B16.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 190aa MW: 22122.4 Da PI: 7.8008 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 30 | 120 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk +ps + k +++++p +f++ g+k s +tl ++ g + ++kl ++ ++++++ +GW+eF++a+ ++eg f++F+++++s+f +v +f+ AT4G01580.1 30 FFKLVLPSTM-KDKMMRIPPRFVKLQGSK--LSEVVTLVTPAGYKRSIKL--KRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSF--RVIIFN 120 6676656555.5556********555554..7789***************..*********************************99999..887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-23 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-24 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.93E-18 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 13.197 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-21 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-15 | 30 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence Send to blast |
MVITRNMKAR ATSVSHRQSQ QDPESPVKKF FKLVLPSTMK DKMMRIPPRF VKLQGSKLSE 60 VVTLVTPAGY KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKK NSSFRVIIFN 120 ASACETNYPL DAVHIIDSDD DVIEITGKEF DTEHKSKKRP RDIEFDKILH DVDVMQVLKE 180 EEEDKRVLRG |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.34404 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 256918_s_at | 1e-140 | ||||
Expression Atlas | AT4G01580 | - | ||||
AtGenExpress | AT4G01580 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G01580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
IntAct | Search Q9ZSH7 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G01580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK175333 | 0.0 | AK175333.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-77-L01. | |||
GenBank | BT010604 | 0.0 | BT010604.1 Arabidopsis thaliana At4g01580 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_192068.1 | 1e-138 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9ZSH7 | 1e-140 | Y4158_ARATH; B3 domain-containing protein At4g01580 | ||||
TrEMBL | A0A178UUC4 | 1e-122 | A0A178UUC4_ARATH; Uncharacterized protein | ||||
STRING | AT4G01580.1 | 1e-138 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 | Representative plant | OGRP2051 | 14 | 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G01580.1 |
Entrez Gene | 828118 |
iHOP | AT4G01580 |
wikigenes | AT4G01580 |
Publications ? help Back to Top | |||
---|---|---|---|
|