PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr2g0103411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41915.6 Da PI: 4.8824 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 4.9e-18 | 10 | 99 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+ p d ++++ l +p++f++++ g+ + + +l++ r+W v + + ++++++kGW+eFv++ngLk g+ +vF++ g+s+ RcHm_v2.0_Chr2g0103411 10 FFKIV-PGDQFTNK-LKIPREFLQHFHGN--IPHQCRLQT-AARTWAVDV--EEVNNKFYFQKGWNEFVQDNGLKYGELLVFHYAGNSD 91 56655.77777776.********777555..333478666.89*******..999999******************************* PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v +f k RcHm_v2.0_Chr2g0103411 92 F--HVDIFGK 99 *..***9987 PP | |||||||
2 | B3 | 43 | 8.2e-14 | 205 | 301 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ k + ++lp +f+ +++ + +tl++ d + ++W+ kl+ + + +r l + W++F ++n+LkegD + F+l++++ RcHm_v2.0_Chr2g0103411 205 SMKPSYIKYKFVWLPSEFTMLVkpLIENSGYVTLRVSDGRVKTWQAKLTCnDVTTNRSKLHGSWSKFMRDNNLKEGDLCAFMLIKDT 291 456666667779******95558533333556777777777*******77788889999*************************986 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + v +fr RcHm_v2.0_Chr2g0103411 292 TILIEVVIFR 301 6666777766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence |
MAPRRKLPSF FKIVPGDQFT NKLKIPREFL QHFHGNIPHQ CRLQTAARTW AVDVEEVNNK 60 FYFQKGWNEF VQDNGLKYGE LLVFHYAGNS DFHVDIFGKN TCGKLFVMPE IEEANEEDDD 120 VSLQISDDSP ESSPPPQKKY KTSSSDKGQM KNKEAHWSKS KMKKKDKGGT SSTQRFTRQK 180 LEPRWRAHVR AEAFKFKNPS AFLVSMKPSY IKYKFVWLPS EFTMLVKPLI ENSGYVTLRV 240 SDGRVKTWQA KLTCNDVTTN RSKLHGSWSK FMRDNNLKEG DLCAFMLIKD TTILIEVVIF 300 RTKEAATCTF SPDMSDNEDH EKDDEDDDDE EGDEENEDEE EEEEEDDDDS RETVDYVSSD 360 SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 4e-18 | B3 family protein |