PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0103401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 404aa    MW: 46121.8 Da    PI: 5.1458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0103401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15996197
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                            ffkvl + d ++ + l +p+ f+ ++  g+++++     + ++ g++W v +  +k   +++++ GW++Fv++ngLk g  +vF++ g+
  RcHm_v2.0_Chr2g0103401  9 FFKVL-QGDQFSIK-LKIPRAFL-QYfnGKVPPK----CFLQTLGQTWLVDV--EKVNHKFYFQLGWNRFVQDNGLKYGQLLVFRYAGN 88
                            77888.66666665.********.5557767666....578889********..999999***************************** PP

                            SEE..EEEEE CS
                      B3 88 sefelvvkvf 97
                            s+f  +v +f
  RcHm_v2.0_Chr2g0103401 89 SDF--HVDIF 96
                            ***..99998 PP
2B343.65.2e-143153981299
                             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               + l lp++fa+ h  ++ ++  ++    +  sW vk++y ++  r  l++GW+eFv+ ++Lk gD +vF l++  +f++ v +fr
  RcHm_v2.0_Chr2g0103401 315 HGAFLNLPRSFAAVHFTNP-QPSHVI-LWVEKSSWFVKVSYIGTATR--LQAGWSEFVHVKNLKIGDACVFVLTDAINFQYDVEIFR 397
                             445699******9995553.443444.455779******77666655..************************99899999999998 PP

                             S CS
                      B3  99 k 99 
                              
  RcHm_v2.0_Chr2g0103401 398 V 398
                             5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MATERNPSFF KVLQGDQFSI KLKIPRAFLQ YFNGKVPPKC FLQTLGQTWL VDVEKVNHKF  60
YFQLGWNRFV QDNGLKYGQL LVFRYAGNSD FHVDIFGINT CKNLCVIPEM EEANEYDDDV  120
SLEILDDFPP CQRKTEEKSL LSCPLPHKKN KTSSSGRADI TPNFRKRVPH LEKSQMKRKK  180
AHWFKSEMID NSDTDSGDED DHDEEDDDEN EDDEEEEEET QDEEVEEEDD GDSVGTLNDS  240
LPCSRTVGKY TLASRLHQRE RKISSAKAKT NIKTVGGLSR EEKILKVIAL QRANAFKSNS  300
VNPCFMVSLS ATYAHGAFLN LPRSFAAVHF TNPQPSHVIL WVEKSSWFVK VSYIGTATRL  360
QAGWSEFVHV KNLKIGDACV FVLTDAINFQ YDVEIFRVTD AVCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165180RKRVPHLEKSQMKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-14B3 family protein