PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0102031

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 508aa MW: 52999.2 Da PI: 8.7137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0102031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RcHm_v2.0_Chr2g0102031 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	11.2	0.0012	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + RcHm_v2.0_Chr2g0102031 138 WKCDKCSKKYAVQSDWKAHSKIC 160 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MPTDLDNSST ASGEASVSSS GNQTAPAPKP TTKKKRNLPG MPDPDAEVIA LSPKTLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEIKK RVYVCPEASC VHHDPSRALG 120 DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EESARGPSQT QNVNLNSESD PKVQTVNSPP PAAAAAAAAQ ASVPSQPTSS 240 SAPSQPAALP IQGSVGVPEL PENPPEDAAA VTQRKGHCSS SNSSSSNGST SSSVFASLFA 300 SSTTSGASLQ PPAFTDLIRA MGQPDQPTDL APSSSIEPIS LGLSTSHASS IFGSAGQERR 360 QYAPPPQPAM SATALLQKAA QMGAAATNAS LFRGFGIVSS SSSSTQQDSM QWNQRQAESD 420 SASIAAGLGL GLPCDGSGWK ELMMGSPSMF GPKQTTLDLL GLGMAAGNNP NGGLSALITS 480 IGGGIDVAAA AASFGSGEYS GKDLARSS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MPTDLDNSST ASGEASVSSS GNQTAPAPKP TTKKKRNLPG MPDPDAEVIA LSPKTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEIKK RVYVCPEASC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EESARGPSQT QNVNLNSESD PKVQTVNSPP PAAAAAAAAQ ASVPSQPTSS  240
SAPSQPAALP IQGSVGVPEL PENPPEDAAA VTQRKGHCSS SNSSSSNGST SSSVFASLFA  300
SSTTSGASLQ PPAFTDLIRA MGQPDQPTDL APSSSIEPIS LGLSTSHASS IFGSAGQERR  360
QYAPPPQPAM SATALLQKAA QMGAAATNAS LFRGFGIVSS SSSSTQQDSM QWNQRQAESD  420
SASIAAGLGL GLPCDGSGWK ELMMGSPSMF GPKQTTLDLL GLGMAAGNNP NGGLSALITS  480
IGGGIDVAAA AASFGSGEYS GKDLARSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-107	C2H2 family protein