PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0101761
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 617aa    MW: 67615.8 Da    PI: 5.2536
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0101761genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3565.7e-1092496172374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              ++Ll+cA++++s + e+a + L rl+e +s++gdp++R+a++ft AL +r++  ++e ++a    +     +++ + ++k++++++
  RcHm_v2.0_Chr2g0101761 249 LKALLDCARVIES-EPERAIKSLVRLRESVSEHGDPTERVAFHFTDALYSRVSPPQPEKSSASYDAS----CEEDFTLSYKALNDAC 330
                             689******9998.6788888999******************************5555554332222....37899999******** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeel 172
                             P+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL +fA+ l
  RcHm_v2.0_Chr2g0101761 331 PYSKFAHLTANQAILEATERATKIHIVDFGIVQGVQWAALLQALATRSTGKPsKIRISGIPAPSLGnsPAASLLATGNRLGEFAKLL 417
                             ************************************************666659*********999889999*************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +++f f++ v + +++l+ + +rv+p+E laVnl+lqlh+lldes++  +   + L+l ksl+Pk+v++ e ea++n+  F+ rf  
  RcHm_v2.0_Chr2g0101761 418 ELNFAFEP-VLTPIQELNESCFRVDPDEFLAVNLMLQLHNLLDESTTGVE---AALRLAKSLNPKIVTLGEYEAKLNRVGFMSRFKT 500
                             ********.799******************************99999888...9********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             al+yy+a+f+sle ++ r+s er  vEr llgr+i   v  e+   +r+r e +e+W+  +e++GF+pv+ls++a++qa+ ll +++
  RcHm_v2.0_Chr2g0101761 501 ALKYYTAMFESLEPNMTRDSPERLQVERLLLGRRIAGGVGPEEPGtKRQRLEDKEQWKFLMESSGFEPVTLSHYAVSQARILLWNYS 587
                             ****************************************99886699*************************************** PP

                    GRAS 346 sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                             +  y++ e+   ++ l Wk+ pL++vS+Wr
  RcHm_v2.0_Chr2g0101761 588 NASYSLIESPPGFLsLAWKEVPLFTVSSWR 617
                             999999888666666**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHSHHHQQLT SAFSLSSAPW PTNTHHAPSL  60
GYGLGGSSFS DPFQLPGSSD TTVGEPGFPF PNMDHHPTSS GFRFSDLGGA AEFDSDEWMD  120
SIIGGGDSTD SSNLPSVCDA WQNNAADFGL YASDPFAPCP SRLSAPCSSP SDLNRVIYSD  180
VHNQKTANLQ PQLPPAWTPP PPPPQQQQQQ QPSSIAVKDA KSANPTPQNN DAVGVSSRSP  240
EIESAPPLLK ALLDCARVIE SEPERAIKSL VRLRESVSEH GDPTERVAFH FTDALYSRVS  300
PPQPEKSSAS YDASCEEDFT LSYKALNDAC PYSKFAHLTA NQAILEATER ATKIHIVDFG  360
IVQGVQWAAL LQALATRSTG KPSKIRISGI PAPSLGNSPA ASLLATGNRL GEFAKLLELN  420
FAFEPVLTPI QELNESCFRV DPDEFLAVNL MLQLHNLLDE STTGVEAALR LAKSLNPKIV  480
TLGEYEAKLN RVGFMSRFKT ALKYYTAMFE SLEPNMTRDS PERLQVERLL LGRRIAGGVG  540
PEEPGTKRQR LEDKEQWKFL MESSGFEPVT LSHYAVSQAR ILLWNYSNAS YSLIESPPGF  600
LSLAWKEVPL FTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein