PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G66770.1
Common NameMUD21.1, SCL4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 584aa    MW: 64587.1 Da    PI: 4.4371
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G66770.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.71.1e-1172185842374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +++++cA+ +s++d ++a+++L +++e +s+ gdp++R+a+yfteAL++rl+          p++++s++++++ + ++k++++++P+ kf+hltaN
  AT5G66770.1 218 LKAIYDCAR-ISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSP-------NSPATSSSSSSTEDLILSYKTLNDACPYSKFAHLTAN 307
                  578899**9.8999***************************************9.......233333444568899********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++f+f + + + ++ l+ +++
  AT5G66770.1 308 QAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPtQIRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFDFIP-ILTPIHLLNGSSF 404
                  *************************************77776**********99998999************************.799********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+p+E+laVn++lql++llde+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +al++ysa+f+sle +l+r+seer+ vErel+gr
  AT5G66770.1 405 RVDPDEVLAVNFMLQLYKLLDETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGR 499
                  ********************99999999...******************************************************************* PP

         GRAS 293 eivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y++ e++  ++ l W+d pL+++S+Wr
  AT5G66770.1 500 RISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySNLYSIVESKPGFIsLAWNDLPLLTLSSWR 584
                  *********99989****************************************99********999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.041191562IPR005202Transcription factor GRAS
PfamPF035143.8E-115218584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG  60
SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS DFGGGTGGGE FESDEWMETL  120
ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW  180
PPSSPLSIPP LTHESPTKED PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL  240
QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK  300
FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS  360
LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN GSSFRVDPDE VLAVNFMLQL  420
YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP  480
NLGRDSEERV RVERELFGRR ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY  540
AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512165843375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.273070.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425688190.0
Genevisible247057_at0.0
Expression AtlasAT5G66770-
AtGenExpressAT5G66770-
ATTED-IIAT5G66770-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G66770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G79430
IntActSearch Q9FL03
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G66770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107000.0AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201478.10.0GRAS family transcription factor
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US250.0A0A178US25_ARATH; Uncharacterized protein
STRINGAT5G66770.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Representative plantOGRP67991519
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Bolle C
    The role of GRAS proteins in plant signal transduction and development.
    Planta, 2004. 218(5): p. 683-92
    [PMID:14760535]
  5. Tian C,Wan P,Sun S,Li J,Chen M
    Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
    Plant Mol. Biol., 2004. 54(4): p. 519-32
    [PMID:15316287]
  6. Gao MJ,Parkin I,Lydiate D,Hannoufa A
    An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase.
    Plant Mol. Biol., 2004. 55(3): p. 417-31
    [PMID:15604690]
  7. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  8. Thibaud-Nissen F, et al.
    Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.
    Plant J., 2006. 47(1): p. 152-62
    [PMID:16824183]
  9. Popescu SC, et al.
    Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(11): p. 4730-5
    [PMID:17360592]
  10. Lee MH, et al.
    Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 2008. 67(6): p. 659-70
    [PMID:18500650]
  11. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  12. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]