PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0101391

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ZF-HD

Protein Properties

Length: 351aa MW: 38824.4 Da PI: 8.8688

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0101391	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.8e-32	132	189	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhAas+Ggh++DGCgEfmps gee ++ +lkCaAC+CHRnFHR+e e e RcHm_v2.0_Chr2g0101391 132 KAVRYRECLKNHAASTGGHVLDGCGEFMPS-GEEDSPGGLKCAACECHRNFHRKEIEGE 189 579************************9.8888******************9875 PP
2	Homeobox	16.4	1.6e-05	288	348	1	57
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r Rt+f++eq + + e+ e + ++ +++e ++L ++lg+ ++ kvW +N ++ +kk RcHm_v2.0_Chr2g0101391 288 KRFRTKFSQEQKDKMMEVAEklgwRIQKHDEQEVQQLCSELGIRRQVFKVWMHNNKQAMKK 348 789**********99999676668999**************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEVRGQDKVL GMPTTLGFNP QHRDSSSSKL SSPSLHHHVN NTLIFNHPQT LDPFYQAPPH 60 HHHHHQPQQS NPYKPSRDPD PIPIPNPDPN LSPAAVCTSP RATSGTPIAS RANHSFKAAP 120 SALAPEPITA SKAVRYRECL KNHAASTGGH VLDGCGEFMP SGEEDSPGGL KCAACECHRN 180 FHRKEIEGET QLVHVPNNYH VLNHHNKNSH SSRNASSAPV LSSLPPPPPV HHHHQYHHFP 240 ATSPSVAGSF PPGMMTFGGG GGAAESSSED LNHIHMYEQS NQAGGSKKRF RTKFSQEQKD 300 KMMEVAEKLG WRIQKHDEQE VQQLCSELGI RRQVFKVWMH NNKQAMKKKQ L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEVRGQDKVL GMPTTLGFNP QHRDSSSSKL SSPSLHHHVN NTLIFNHPQT LDPFYQAPPH  60
HHHHHQPQQS NPYKPSRDPD PIPIPNPDPN LSPAAVCTSP RATSGTPIAS RANHSFKAAP  120
SALAPEPITA SKAVRYRECL KNHAASTGGH VLDGCGEFMP SGEEDSPGGL KCAACECHRN  180
FHRKEIEGET QLVHVPNNYH VLNHHNKNSH SSRNASSAPV LSSLPPPPPV HHHHQYHHFP  240
ATSPSVAGSF PPGMMTFGGG GGAAESSSED LNHIHMYEQS NQAGGSKKRF RTKFSQEQKD  300
KMMEVAEKLG WRIQKHDEQE VQQLCSELGI RRQVFKVWMH NNKQAMKKKQ L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-27	ZF-HD family protein